Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10000595 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10000595 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28235
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	41 (65.08%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28235

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

41 (65.08%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F007921	Metagenome / Metatranscriptome	342	Y
F011394	Metagenome / Metatranscriptome	291	Y
F014140	Metagenome / Metatranscriptome	265	Y
F066776	Metagenome / Metatranscriptome	126	Y
F105192	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000059532	F105192	N/A	MNISLYQILITLFAASISGLFTAYINSKRLKKEKIAQAADKAHDQLLLEIKDLQIKLYKLEKDLSEWKDKYFEALQELIKVKAELEGTMLKLTHVELHSNED
Ga0244777_1000059535	F011394	AGGAG	MFIDKNKDHFKYGINEWTGEPNKPVFYNKEMALKIRELKKPVNGLQMDIVKYPEFLAIRLYEDNFSQYDGSIKMQVIEYVEMVKKILETYGVRVELEGKPGGQIK
Ga0244777_1000059537	F066776	AGG	LLYLTEKGVEIFIKRSQSKTQESFWNNYDLVIWKKDNGGYTSINGMYRQNAWGKVEKFSIGREGIWKLSKKYVKHFK
Ga0244777_1000059540	F014140	N/A	MNKYRIKLDVEVEVEAFNTEDASEYIHDIFNIDDEIKKINVVKISPINH
Ga0244777_1000059558	F000376	AGGA	MSEYQELAKECKCCSKHVPLPIVMKSYNGIVVCPTTLQNIIEYKRLWESFGSRPMGAIRKHFSEYVQQIVESGMHKDEG
Ga0244777_100005956	F007921	AGGA	MINWLVNRIFRWDSLRHAIFDEVRLYQSLDKTMWRMEHESPTNLTWSEGDKWYGWTFNPINKRYYFDDIGNESLMGLWEDQWAREAKESNV
Ga0244777_1000059561	F000369	N/A	MSEIEPAVHFDRMNRVVEELLKGNSATQIATLTGFSRKEVLDYVDEWKSVVHNDSNIRDRAREAISGADQHYAMLIKEAWKTVEDADTQGALAVKSGSLKLIADIETKRIAMLQSVGVLENTQIASQIAETERKQEILVGILKEVTASCPKCKMDVAKRLSQITGIVESVVIEDADVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10000595

Overview

Ecosystem & Geography

Associated Families

Sequences