Scaffold Ga0244777_10000371

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10000371
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35978
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (64.58%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F013526	Metagenome / Metatranscriptome	270	Y
F084234	Metagenome / Metatranscriptome	112	Y
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000037136	F084234	AGGAG	MLDFITSPFEWFANVVQYSLIFMAIIMLVLTIGAVVAIPLGLKLLGVAFAKTIVVETSKVLKDLGINKIDAKQSEDIKTLKYHYDQKVVPILSRVKT
Ga0244777_1000037142	F087194	AGG	MKLDEYKQMVEAQRLASLGKGLEALMKSKAIQEKMKEENK
Ga0244777_1000037143	F013526	AGGA	MKRNVLISFVTEADTDLQAVFNLNKIFTKLSESELENFDVFEILPVE
Ga0244777_1000037146	F006385	GGAG	MILDTGTLIAITIALAGSVTMMCLFWKQNIEQHKEIRRLQVALRTERLNK