NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255061_10107581

Scaffold Ga0255061_10107581


Overview

Basic Information
Taxon OID3300024342 Open in IMG/M
Scaffold IDGa0255061_10107581 Open in IMG/M
Source Dataset NameMetatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1387
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0255061_101075812F079361N/AMIYFTIAKNECGYLLDSISENYEVLKNKFPDEKIYKSDKPIVSIYIIKDQLQEYHG
Ga0255061_101075813F064301N/AMAKKSGITKAAIYGPTKVQPVWQIGMLFPDGKKISKPRCTLNEIFNTYFINLDKYLNKGLSAEELLNKYKETFEKGNIKVQINYIDSWGHTWKGKIAWPVQDKFIEYLNKRLNND
Ga0255061_101075814F057035N/AMTEKEFLEKRTPIWLEGEDLHISTPSSSDKNDFHAFLSKKYGYNWMFAIRGYYWPGSHVSLYIGDYECPNCTLLVASYIFSYFPDIKYIGFGCNKGNPGEIWSNKIIVARDINCLKDDISNQQSEKSI
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