NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255061_10026295

Scaffold Ga0255061_10026295


Overview

Basic Information
Taxon OID3300024342 Open in IMG/M
Scaffold IDGa0255061_10026295 Open in IMG/M
Source Dataset NameMetatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2554
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F065312Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0255061_100262951F012184AGGAGMTNVEILNTILSIPGANMARANKTNFIVIPTDEGFVKVAVSNALAKDTKAHKAFNAEAAIAEYKAYEAEVALREAEKATKPVKVRGVNPEAQARRDELDAKIAALPSFTEYTATDILKALSGQVAENVTVMAVGQSAKRLVENGVLTVGNREGDKKSYYTKA
Ga0255061_100262959F065312AGGAGGMSKKKNPKQKTWVEVFQSERKKFPQGYCVTRIIPDKRRKPPKHKGRELE

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