Scaffold Ga0255061_10026295

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255061_10026295

Scaffold Ga0255061_10026295

Overview

Basic Information
Taxon OID	3300024342 Open in IMG/M
Scaffold ID	Ga0255061_10026295 Open in IMG/M
Source Dataset Name	Metatranscriptome of sheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 RNA GHGhigh gp2 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2554
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location Name	New Zealand: Palmerston North, Manawatu-Wanganui
Coordinates	Lat. (^o)	-40.3794	Long. (^o)	175.6106	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012184	Metagenome / Metatranscriptome	282	Y
F065312	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255061_100262951	F012184	AGGAG	MTNVEILNTILSIPGANMARANKTNFIVIPTDEGFVKVAVSNALAKDTKAHKAFNAEAAIAEYKAYEAEVALREAEKATKPVKVRGVNPEAQARRDELDAKIAALPSFTEYTATDILKALSGQVAENVTVMAVGQSAKRLVENGVLTVGNREGDKKSYYTKA
Ga0255061_100262959	F065312	AGGAGG	MSKKKNPKQKTWVEVFQSERKKFPQGYCVTRIIPDKRRKPPKHKGRELE

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