NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228670_1057092

Scaffold Ga0228670_1057092


Overview

Basic Information
Taxon OID3300024319 Open in IMG/M
Scaffold IDGa0228670_1057092 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 85D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)864
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023607Metagenome / Metatranscriptome209Y
F069331Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0228670_10570922F023607N/AMHIYKLVFDTEQQGKQVLIDNNVWEEVTIEGVTSMQYINGTKGVVYIGKVVKTQDTYDPDGHEITPPIYYDGVAYDIMSTDELDFGSFEVYPADNAVHQFYGYPRNAEVPKP
Ga0228670_10570924F069331AGGMTKYFKEVEYKMDIDFLAKLDKAREFAKVPFVINSAYRSTEHPES

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