Scaffold Ga0255148_1017147

Overview

Basic Information

• Taxon OID: 3300024306
• Scaffold ID: Ga0255148_1017147
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1407
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002738	Metagenome / Metatranscriptome	533	Y
F015987	Metagenome / Metatranscriptome	250	Y
F044444	Metagenome / Metatranscriptome	154	Y
F053230	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255148_10171471	F015987	N/A	MAQITHTKLKDLNVLKLYEHYGALERSLPLLTPESQEVARAELEACANLRSEKIDRIYYAMAAHEDALERIKKEAEHLTAAKRHHESQLRSL
Ga0255148_10171472	F053230	N/A	MFETILAAVVPVLKDIFWTAAAALLAYALNKLQAHFNTI
Ga0255148_10171473	F002738	AGG	MSIDTYGLTFEQYTEFFHKNVRFAAKLYLDTCNILNSEGVGNVDFKTVLDMYQEAVYTANDDCRRYQRTNNPDALKEATVEIFGITPTREEMFNEIQELKEKVETLIQLQSKS
Ga0255148_10171475	F044444	AGGA	MNSEIISMDEDILEYARQLATQPITNFMTDYKRYDLELPEDTHWELVKLAADLKMHHEDYAQNILINHVEQALDRKAQA