Scaffold Ga0255147_1003972

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1003972
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3436
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008943	Metagenome / Metatranscriptome	325	Y
F016800	Metagenome / Metatranscriptome	244	Y
F018913	Metagenome / Metatranscriptome	232	Y
F090316	Metagenome / Metatranscriptome	108	N
F101046	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100397213	F008943	N/A	MKFEGFDWAIFSLFFGIIVAGSIITYGEQQQRVLFQQTYNKNLECRQELKGQTVVRVNEICGEVPVIGDFVK
Ga0255147_10039722	F018913	N/A	MTNQQIAQELLKVICKSEAHNTAWMLQEVLQHLRKQLSGNNVIDFYDEQGMMYNYGWDDCLKEIDGICDELELL
Ga0255147_10039724	F090316	AGGAGG	MPDDLQREEEIFLKALKEYKEKKTQEPTDKTTNTLPAVIAAVL
Ga0255147_10039726	F101046	GAGG	MDITEYGVSLEPEELREIITGKMGFRKCPDCQGEGESWTLHYVLADDLDQDNEQFKEVSAQFAADFDEDNLPPQYSFGECHLYSCETCHGVGYVPIGGY
Ga0255147_10039728	F016800	AGGA	MLDAFTDYPIPSYGDVAGEKAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEARLDDGIPFTDEELKTLPWTEVSFPHSI