NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255147_1000435

Scaffold Ga0255147_1000435


Overview

Basic Information
Taxon OID3300024289 Open in IMG/M
Scaffold IDGa0255147_1000435 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12174
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (88.57%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Associated Families19

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000447Metagenome / Metatranscriptome1128Y
F000450Metagenome / Metatranscriptome1126Y
F001019Metagenome / Metatranscriptome804Y
F001781Metagenome / Metatranscriptome635Y
F002071Metagenome / Metatranscriptome596Y
F003663Metagenome / Metatranscriptome474Y
F004666Metagenome / Metatranscriptome428Y
F005741Metagenome / Metatranscriptome391Y
F005745Metagenome / Metatranscriptome391Y
F008132Metagenome / Metatranscriptome338Y
F018349Metagenome / Metatranscriptome235Y
F024549Metagenome / Metatranscriptome205Y
F029721Metagenome / Metatranscriptome187Y
F038643Metagenome / Metatranscriptome165Y
F041724Metagenome / Metatranscriptome159Y
F073599Metagenome / Metatranscriptome120Y
F095357Metagenome / Metatranscriptome105Y
F105172Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0255147_10004351F095357AGGCGGVATKEHKVGELLANSVEDHFFNPATLAYYLSQQPTWTIDRVMEVVAWIIEKNARRAEVEAGNGIQSEGLILAYNLDKLVDRIKSTNQFENIKLP
Ga0255147_100043511F000450AGGAVGDRANFAFVQPNGNTIVLYGHWAGHNMLANLAEAVAKAESRWSDPSYATRIVISQMIGDGWGFETGWGIHVNEIGDNEHKIPVIDWAQRTFSLHSEDSFFNEDNKVRGMSNEAIFTMDLAAFVEKYSDLTLSV
Ga0255147_100043513F018349AGGAGMDYEDGFQDGVKFTREVIINNIRKWAEDHEEGPTLDWVADRIEFGTLDNDL
Ga0255147_100043514F000311GGAMYFELTAPDRLSLEMAYWDAQITGLDPEFLPPLTFSVGTGSIEKVSRIRDKFNLKETYLSESEPTGYTRR
Ga0255147_100043518F005741N/AMKNRFRVEIYDANKMNDVTIYSEQGVDKEYLTELVISNLRNFQGQVRAYVFDNLKKKKTTALMLDENVVNKINKKRILTAIEIGLV
Ga0255147_10004352F004666AGGAMATKREYLTQKGITVGRRGRFSAAAKQALSEAEKQGIKFTAETKTAKN
Ga0255147_100043520F002071AGGMPTLEIGQTITTAKSGVVGVIKAVDNHPSGVSRVLLDVNGTERWTSVSN
Ga0255147_100043522F003663AGGAMLSTALEILEATKESIFDEDIMGLAGELHTRRNELDDETYAKFLFMYSSAVASKVADLVTKVLLTETQFREMVEALNEMDNLSEEILEELGE
Ga0255147_100043523F038643AGGMKDTTNWAKFPFTVDGVEFVSMLDPNGSMYQQVKLVPAQVFTMMNESAIRDLIGKVSLMSKSEIQDELDRVNEGFGQAYLALA
Ga0255147_100043527F024549GGAMYKLFTYYDGKLEFTHQFNDALEAFEAFARCVDVGFAMETATYNLEMPTGKMYTKNFDRIGLVSVK
Ga0255147_10004353F001019GGAGGMSIYEPSLEILEVAYEVSPGGTRTFEVYDKDESDPLSIPIYETESLTDAVEYCYNLGKDFIVRTYAEWEMRELLADL
Ga0255147_100043530F000447GAGMGYIEIFRLDENGAGWVDLSEATPDELFNIELGLLNEGALFNTPEAD
Ga0255147_100043531F029721GGAGMKGKLMRTYSIEDLLVGQFYRPASLARRFFGGEINFAEKRDDVWVGTDYQAYSIRYRVGHSVKNEWATIAVKVGE
Ga0255147_100043533F105172GGAGMTLELNDYGLEFDTYVCYIALSWQVLIPALIIGIGYKIYKMKGKKK
Ga0255147_100043534F008132AGGAMMTKWDTIQADVADAYRHLDDVEEIENEEEDFFGFAKAIEIDHLTDEEVEEIFNMFGDK
Ga0255147_100043535F073599AGAAGGMSANLYNIESLLIGKTYRSRSVTGEIISAEKHPKCVHYADAEAYLVEIRKQGGGYTYRTVAVSVS
Ga0255147_10004355F001781GGAGMKPDDKDKLNKCLDILDTTDLGLSLVWLWTWSTIKNFMEDEQFIMKKTEDEMWECLCEAVAAGHGFTLEYGAEQHYDEVMDWMLGREYMVDSDFEDDDE
Ga0255147_10004356F005745AGGAGMQELYSEKLDPHLQRLVDAGVSGLDIMHGHLKILMLEAEAHYEEAQRVEEENDFDDAMQSMERKYWEGQCDALAHLYKLTYDLSFAIAGMENPNEA
Ga0255147_10004359F041724AGGAMADRLELNDRGSFLDDENEMVIGAIIQEISEQLFEDWNNSNLDEGTFYADWKIAEMSNDNYLKGRFNQFYDLTPEDDEYLEWDEEK
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