Scaffold Ga0255147_1000169

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000169
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26470
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (94.92%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F004231	Metagenome	447	Y
F015570	Metagenome	253	Y
F020664	Metagenome	222	Y
F024504	Metagenome	205	N
F029673	Metagenome	187	N
F032957	Metagenome	178	Y
F063332	Metagenome	129	Y
F079808	Metagenome	115	N
F079815	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100016913	F079815	GGA	MNDYSTILMRIEQSVKSLDKKCMNKSYDGFVLDINRINNDLVMLAHWIGEQQIKQSQQNR
Ga0255147_100016914	F032957	AGGAGG	MDNELMGTTRMFPRTLETAFPKQYVNEGVFEGPYYSAPHIGDVPVLLGLIATISMIAYVVWNYL
Ga0255147_100016915	F079808	GGAGG	MKLKNELEDIYEDLWNVYFCCYCLQPQDGKLVCCHENHFVEFKYLDADCRQEIAQEVWNG
Ga0255147_100016916	F024504	AGGAG	MDRTVVGLTAPYRKSDYTYQNMLLDRIKDLEAIVKKLEQRIAQLEGKK
Ga0255147_100016917	F015570	AGG	MTKLDDAFDDLEFNVSEQIKKSTYFDEQRKVATGVTDGTAQRELVRDLTENLRAIDPEIIRNDVLEEVASEIAKLPFGDTASSFAQFVRAMKR
Ga0255147_100016918	F029673	N/A	MIQHLRMAACDEQVINGMSNAYDLGAEHERDIICTLIFNMVKDHHLAQNLVDTIRVRE
Ga0255147_100016919	F004231	AGGAG	MCVKPSDFKHEICVYLEGIGECLVCFDILSPGEELDPDHADDYEIDFAVFDEDGKHITYDLERKQYNFCENKAMDEMRDITTQWKKEWEESFD
Ga0255147_100016920	F001629	AGGAG	MILNQGKVAGGLIDDLLETVHKYDETLYMATVIGCLELVKQQLITESMENDDGT
Ga0255147_100016930	F020664	GGCGG	MEKQETKFNLIRFSPAEREIMRTIGGGNISEGARICVMWGAHFWNLGLNTEMNLQHIGLVTVSSTDNYPHE
Ga0255147_100016933	F063332	GGAG	MRKTTELDQIKAFVRGLIEGIKDTHRGEDADFYLEDYWNSWDDTLDINIWIDESDPQKYICTLYRVVDGERDDETFQRLDYLLGDA