Scaffold Ga0255147_1000102

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000102
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35523
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (91.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001143	Metagenome / Metatranscriptome	766	Y
F006545	Metagenome / Metatranscriptome	370	Y
F032263	Metagenome / Metatranscriptome	180	Y
F037075	Metagenome	168	Y
F104460	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_100010244	F001143	AGGA	MAAWLIAIIGVVYLVVAVQLLLQGKIGLGIAFVGYALGNVGLYIAAR
Ga0255147_100010246	F104460	AGGA	MSQQVMIEELTKEIYLAIEKFNEALPLASVVGVLEVIKYELILNIGDDDET
Ga0255147_100010248	F037075	N/A	MVSEERLKNWGWWCAFGHLGPEVRTQCASAEGNYESEDVFEGEEPRVEPDMLDGEAVENAVRHLPELSRRVLKYRYIMFPYHLQHTVAQKLKMSTDRLETELTVAKRRLHDRLQRAGQQ
Ga0255147_10001025	F032263	AGG	VKSVWEKARPKSLPKPKALSKNQKAAAKRFAKETGRKYPSLLANMRGAQAKK
Ga0255147_10001026	F006545	AGG	MKVKDAAKIFEKYDTRTSRKMAEYNREGGGVRKPVRSVAGASTGDKYDRAKFIYRKAAQALTAGHPLKDDNGTPTPAALQFKRWAAKVPQNRQDLQDLKALGSRLKERYKPKK