Scaffold Ga0255147_1000020

Overview

Basic Information

• Taxon OID: 3300024289
• Scaffold ID: Ga0255147_1000020
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepA_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 112301
• Total Scaffold Genes: 176
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (79.55%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Associated Families: 19

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001106	Metagenome / Metatranscriptome	776	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004051	Metagenome / Metatranscriptome	455	Y
F004666	Metagenome / Metatranscriptome	428	Y
F005092	Metagenome / Metatranscriptome	412	Y
F005745	Metagenome / Metatranscriptome	391	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007363	Metagenome / Metatranscriptome	352	Y
F011394	Metagenome / Metatranscriptome	291	Y
F015208	Metagenome / Metatranscriptome	256	Y
F015730	Metagenome / Metatranscriptome	252	Y
F021481	Metagenome / Metatranscriptome	218	Y
F037190	Metagenome / Metatranscriptome	168	Y
F041724	Metagenome / Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255147_1000020109	F004666	AGGA	MTTKRDYLKAQGITVGARGRFSSAAKQALAEATQKGIQFTAEKPTSNRKK
Ga0255147_1000020112	F005745	AGGAG	MELTDSLQRQVDHGSSGLDILHGALKVLMVDAEDELRMAQETEEENDYDDAMESMERKYWEGQVDALAHVYSLTYALSFAIAERDKK
Ga0255147_1000020115	F041724	GGAG	MADRLELNDRGSFLDDENQMVIDAVITEISEHLFEQWNSSNLDEGTFYADYQIALMSSDPYLQSKFNLFYELTPEDEEYFNVGL
Ga0255147_1000020120	F001043	AGGAG	MSDYKSGWDDGYKYARDEIMEKLREIDINDIDSWILDRLSDMIEGGKL
Ga0255147_1000020121	F000311	GGA	MYFELTAPDRLSLEMAYWEAQVIGLDPHFMPPLTFNIGTGSIEKVSRIRDKFNLTETYVSEYEETGYTRR
Ga0255147_1000020126	F021481	AGGA	MSPILDTKKGRFYRKGDVFTTGKSGITGTISEIISIRPNLTKLRLDTGSGLRYAMVKVGK
Ga0255147_1000020128	F004051	AGGA	MTINGYTYKVGDLFTTLKSKKTGVIKEIVPNASGSVRVLLELPTKETRWTTISAESLSN
Ga0255147_1000020136	F015208	AGGAGG	MYKITVAYDENSPHFTQQIADELEAHKSFASYVDWGFAMDYSTVNLYTPSGKCYTKIFYREGRRVVEK
Ga0255147_1000020137	F005092	AGGA	MDKLETALRAIKNCDACRGMGAIYWGNGEDYFDYETCECNPYELILDNDGDVIWDNGLLSENELSIFATQEAN
Ga0255147_1000020138	F006744	AGGA	MDLIEFRNFINAQREASKAEALSVLTATIQERKEKENG
Ga0255147_1000020139	F007363	AGGA	MRSYSIVDLLIDQYYAPTSMRRRYNGGIINFAEKRDDVYLSEGYEAYSIRYRPTGSLKDEWATVAVRLPD
Ga0255147_1000020140	F015730	AGGA	MLTKKTLDKIIFEYQHGGVKQYHPEISMSERKALLKYLFSLPAECSAECEATHTA
Ga0255147_1000020142	F037190	AGGAG	MDRYLLIELGSDGIAFETAQFDFYASWLGLGLVILSVVAYKIYRNKKGK
Ga0255147_100002019	F001106	AGGAG	MSFSTLKIAELRQVAEDFAVELPNSKNKTEIIAALAEEGVTWDVYQKTIENIEDSKLEADEVLPTFDPKKEQPEDTVLVKMERANFRYDAMGFTFTKEHPFVAMPTEKAEEIFEKEEGFRLATPVEVREFYA
Ga0255147_100002040	F002501	GGA	MMHCRRCGGRVFIDRVFSQKLHIELYCLLCGRRWMINKEMSIFGRWLDEKELEQRKTFGISS
Ga0255147_100002063	F000369	N/A	MEIELADHFDKMNKVVSELLKGNNPTQIATITGYKRAEVLDLIDEWKSVVHNDSSARERAKEAVSGADQHYAMLIKEAWSTVEAADAQGQLNVKANTLKLIADIETKRIGMLQQVGLLDNAELANQIAETEKKQEILVGILKEVTAGCPKCKLDVAKRLSQITGVVEPVVIDTEEASGS
Ga0255147_100002065	F000376	AGGA	MTNIYQERAKECKCCGKHVPLPTVLREYNGVMMCPTTYANVLEYTRIWKQIGSRPAGSIRKHFSEYVQQVVETTIDISDQTKI
Ga0255147_100002081	F011394	N/A	MDINQWTGELNKPVFYTKEMAKRVREIKQPVYGLQMDIVKFPEFLAIRLYENNFMQYGDAERIRIIDYIEMVKKVLESYGVRVELEGAKGERIL
Ga0255147_100002083	F000671	GAGG	MEKILCYSCSKSKNKLNTRRSGLLTINLLMCETCIVSKYEPRWVIILAGRQFGPDHVKDYIIKKRYIGQPILADELLV