NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179589_10063326

Scaffold Ga0179589_10063326


Overview

Basic Information
Taxon OID3300024288 Open in IMG/M
Scaffold IDGa0179589_10063326 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1429
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002177Metagenome / Metatranscriptome587Y
F086013Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0179589_100633261F086013GGAMGNTQIDQNLFAALYMLGFNFLDGDLSSGEIAEIK
Ga0179589_100633262F002177AGAAGGMMQTAELATQLPTYGRRIKFTPERVQQIRNLVERGKSREEIAELIGVTVGSLQVTCSRLGISLRRVVFDNGLRLLRRDGPHNGTNTYTVSRPGGVPLPPISGQPQQNSQSGPVEQPEATTPHEAGEMGLATFALRMKYRGHERTSELPLTQDMITQLAFEAQFRNMSIGELVGELLIAIMKRDIFQHVLEPNCKQP

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