NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247690_1031046

Scaffold Ga0247690_1031046


Overview

Basic Information
Taxon OID3300024287 Open in IMG/M
Scaffold IDGa0247690_1031046 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK31
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)617
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006715Metagenome366Y
F059326Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0247690_10310461F059326N/ALIVSIEQRDATVIQVTLSPTNFARLLKDPEGTGKAIAEEATINDQE
Ga0247690_10310462F006715AGGAGMYKLRWNTLLLVVIAVLAALPVHAQEVEDTIRIKTRAVFLDALVKDRKTNLPISNLTQENFQVLDDGKPRPISYFTHEGQARKPLALILILDLREDGAGRFLKETEILKAMENELLKLPPGDEVAILAMNIGEDEQRTWTTEFTNDRAKIAAALAQV

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.