Scaffold Ga0210003_1017367

Overview

Basic Information

• Taxon OID: 3300024262
• Scaffold ID: Ga0210003_1017367
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4519
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020533	Metagenome / Metatranscriptome	223	N
F031662	Metagenome / Metatranscriptome	182	Y
F102060	Metagenome / Metatranscriptome	102	N
F103900	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0210003_101736711	F020533	GGA	MQDAIMLDQDDLVAEFERKVRDKKIFFEVINPGETESKGVDIQAMLEENNKLKSELRIFKDIVDRSITIDARGGFNG
Ga0210003_10173674	F102060	AGGGGG	MEITIDRLKGIALDIKLDAANDLGLDNERFHGIVEGLDRAINHLEEVAKND
Ga0210003_10173676	F103900	AGGA	MSNHRNQVILESLYQKYIDLGYEDAEAQELAAKEFEENSN
Ga0210003_10173679	F031662	AGGAG	MDFKIEKNIPVRTFNSPFCEALDQLEIGDSIGNLTKKEVYKYRPNFYTPTFRDRKFTFKKETGSMYRIWRVA