Scaffold Ga0261704_123484

Overview

Basic Information

• Taxon OID: 3300024253
• Scaffold ID: Ga0261704_123484
• Source Dataset Name: Lab enriched microbial communities from a contaminated site in Ontario, Canada - KB1TCB_rich_medium
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 571
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Source Dataset Sampling Location

• Location Name: Toronto, Ontario
• Coordinates
  • Lat. (^o): 43.65699737
  • Long. (^o): 79.39033177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040026	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0261704_1234841	F040026	AGGAGG	VPHSTNGSGFWWLQSAYLNVLEERGIVSPETALPLDEIDGMINPFVRFGAFGSGWLVVHKLSRYGVLVACPGNRYYLNQEAADEFRHSFARWWTW