3300024253: Lab enriched microbial communities from a contaminated site in Ontario, Canada - KB1TCB_rich_medium

Overview

Basic Information

• IMG/M Taxon OID: 3300024253
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0134237 | Gp0304276 | Ga0261704
• Sample Name: Lab enriched microbial communities from a contaminated site in Ontario, Canada - KB1TCB_rich_medium
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Toronto
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 77393267
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5
All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Laboratory Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): na → na → na

Location Information

• Location: Toronto, Ontario
• Coordinates
  • Lat. (^o): 43.65699737
  • Long. (^o): 79.39033177
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040026	Metagenome	162	Y
F088079	Metagenome / Metatranscriptome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0261704_104950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	166424
Ga0261704_116931	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	82307
Ga0261704_123484	All Organisms → cellular organisms → Bacteria → Caldiserica/Cryosericota group → Candidatus Cryosericota → Candidatus Cryosericia → Candidatus Cryosericales → Candidatus Cryosericaceae → Candidatus Cryosericum	571
Ga0261704_136281	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	97167
Ga0261704_139916	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	72462
Ga0261704_140683	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	23972
Ga0261704_153023	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	140276

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0261704_104950	Ga0261704_10495087	F088079	MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMFVGQNCTFCTSRLGNLAPNPYRMLTRLDVFVHICEIYKVNITFFKSNMVSTK
Ga0261704_116931	Ga0261704_1169311	F088079	MLTEKAILPENVPFRSIDEAIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTRLDVFVHICEIYKVDITFFKSNVVSTK
Ga0261704_123484	Ga0261704_1234841	F040026	VPHSTNGSGFWWLQSAYLNVLEERGIVSPETALPLDEIDGMINPFVRFGAFGSGWLVVHKLSRYGVLVACPGNRYYLNQEAADEFRHSFARWWTW
Ga0261704_136281	Ga0261704_1362812	F088079	MLTEKAIWLENVPFRNVDGAIGGQNCSVYFVESMIVGQSCTFCTSILGNLAPNPYRMLTRLDVFIHICEIYKVDITFFKPNVVSTK
Ga0261704_139916	Ga0261704_1399167	F088079	MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKADITFFKSNVVSTK
Ga0261704_140683	Ga0261704_14068319	F088079	MLTEKAIWLENVPFRSIDGAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLATNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0261704_153023	Ga0261704_1530232	F088079	MLTEKAIWLENVPFRSIDGAIGRQNCSVYFVESMFVGQSCTFCTSILGYLAPNPYRMLTRLGIFVHICEIYKADITFFKPNVISTK