Scaffold Ga0228673_1037054

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0228673_1037054

Scaffold Ga0228673_1037054

Overview

Basic Information
Taxon OID	3300024242 Open in IMG/M
Scaffold ID	Ga0228673_1037054 Open in IMG/M
Source Dataset Name	Seawater microbial communities from Monterey Bay, California, United States - 91D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	864
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.8313	Long. (^o)	-121.9047	Alt. (m)		Depth (m)	5
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044514	Metagenome / Metatranscriptome	154	N
F092096	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228673_10370541	F092096	N/A	NVEGPSIVVNIPEQQVKEKVIIKEVKVPVKKKKEKEQEIDW
Ga0228673_10370542	F044514	N/A	MSSFKKWWKVNGQGIGFIAGIVFLNAYFLILCDLMNKHEWLAGVWLLCFFGFAGWYSWQMKIHGWRLPKDIKDTH

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.