NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228665_1131001

Scaffold Ga0228665_1131001


Overview

Basic Information
Taxon OID3300024235 Open in IMG/M
Scaffold IDGa0228665_1131001 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 79D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)515
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004166Metagenome / Metatranscriptome450N
F093220Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0228665_11310011F004166N/AMKKLILLFLLIPLISCSDHQTNSSWGSYATNKETQKQEFWFISYKTREECIADMQWQLEGEDDPNKKRISILHTKPYGCHFMSNNKWLSMYYYLVYKDEDLGCLWESSNP
Ga0228665_11310012F093220N/AAYANEWDVVVELNKSNVKIDRMQENLNIIDKNVRVLEKIVDTAENNLIVAINNACNVKTN

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