NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233399_1110199

Scaffold Ga0233399_1110199


Overview

Basic Information
Taxon OID3300024231 Open in IMG/M
Scaffold IDGa0233399_1110199 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 43D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)624
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005012Metagenome / Metatranscriptome415Y
F088272Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0233399_11101991F005012N/ASVVFADNFELLCKGEEAKYLDGDPNSKEVTTKVIGIQLYEEGMRLDGEWFDNKSDLTEDYLLERSYVKSKDNIIAARKFSTNALIEGREIQTIKIDKVEINILANDIFWTHEFNRVDKTNSQLNTIYAFRKSFKGACK
Ga0233399_11101992F088272N/ADNKQTKGGIFMAVILLATSYVWINSTGYWFVAHAIEISGKNLLIISFFIGFLSTTKSISELNSKS

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