Scaffold Ga0233402_1024198

Overview

Basic Information

• Taxon OID: 3300024229
• Scaffold ID: Ga0233402_1024198
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 54D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1325
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002047	Metagenome / Metatranscriptome	599	Y
F085894	Metagenome / Metatranscriptome	111	Y
F090410	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233402_10241982	F002047	AGG	LPYITKDDVLSLIDEGYLEKKDAKFILTSKAKLFINRMDNYFIKAKKKTDISLMGKNFIDNINAYREIFPAKKLPSGKPARNNVKALSDAFRWFFETYDHTWDDVIKATKMYVNEYRDKEYMYMQTSQYFICKQYKHRVKHSTLAYYCDMSIEGISTENEHFKENVV
Ga0233402_10241983	F085894	N/A	MTADQITEILNKLNLVLEDFKMLRDGTWVPDKQSCNDSIDNIESIIYIINNE
Ga0233402_10241984	F090410	N/A	MSKTKESWSGQHTAFNEALKYMFRRSTGEEKSIYTPWPKFNDATTDGLEWNTLTV