Scaffold Ga0228636_1003115

Overview

Basic Information

• Taxon OID: 3300024191
• Scaffold ID: Ga0228636_1003115
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 45D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4127
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045773	Metagenome / Metatranscriptome	152	Y
F053312	Metagenome / Metatranscriptome	141	N
F095519	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0228636_10031153	F045773	AGG	MSNVINFPKSGITATKWFCECGHALEYWVGDDGNGYGICPHCNLGQPNEISILEGDEEE
Ga0228636_10031158	F095519	AGGAG	MKINECCLKDIKAREAKLQEIAEGRQFFVWAMALLILFAIVGNMEYSDCINLGVC
Ga0228636_10031159	F053312	GGGGG	MSYKVLNDAVGLIRDETPLWDGSYQELPDATKDGLIALWLITHPTWMDDVFPHTVSDKRLLALEAVYSEDATSRMAAAMFRDAAERNAKDVDNDAYLSEALDDFEDILDSPDFLEEIREQIYSYLEPSMEELVMDSYADLCHLDRLIMGSH