NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095519

Metagenome / Metatranscriptome Family F095519

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095519
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 54 residues
Representative Sequence MKINECCLKDIKARENKLQDIAEARVFFVASMALLILLSIVGNMEYNDCINLGVC
Number of Associated Samples 66
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 85.71 %
% of genes near scaffold ends (potentially truncated) 31.43 %
% of genes from short scaffolds (< 2000 bps) 78.10 %
Associated GOLD sequencing projects 55
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (78.095 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(31.429 % of family members)
Environment Ontology (ENVO) Unclassified
(80.952 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(98.095 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 87.27%    β-sheet: 0.00%    Coil/Unstructured: 12.73%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF05766NinG 20.95
PF11753DUF3310 6.67
PF03237Terminase_6N 2.86
PF02195ParBc 2.86
PF12850Metallophos_2 0.95
PF05133Phage_prot_Gp6 0.95
PF13392HNH_3 0.95
PF00583Acetyltransf_1 0.95
PF12851Tet_JBP 0.95
PF04466Terminase_3 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A78.10 %
All OrganismsrootAll Organisms21.90 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10058100Not Available1880Open in IMG/M
3300000101|DelMOSum2010_c10062848All Organisms → Viruses → Predicted Viral1771Open in IMG/M
3300000101|DelMOSum2010_c10078747Not Available1472Open in IMG/M
3300000101|DelMOSum2010_c10100308Not Available1205Open in IMG/M
3300000115|DelMOSum2011_c10128599Not Available781Open in IMG/M
3300001352|JGI20157J14317_10009285Not Available6626Open in IMG/M
3300001352|JGI20157J14317_10128122Not Available838Open in IMG/M
3300002040|GOScombined01_105091839Not Available1581Open in IMG/M
3300002930|Water_100795Not Available6244Open in IMG/M
3300004279|Ga0066605_10052725All Organisms → Viruses → Predicted Viral1830Open in IMG/M
3300004279|Ga0066605_10134454Not Available994Open in IMG/M
3300004457|Ga0066224_1052065All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae2424Open in IMG/M
3300005941|Ga0070743_10276885Not Available543Open in IMG/M
3300006029|Ga0075466_1038051Not Available1468Open in IMG/M
3300006399|Ga0075495_1170104All Organisms → Viruses → Predicted Viral1139Open in IMG/M
3300006399|Ga0075495_1518424Not Available1250Open in IMG/M
3300006399|Ga0075495_1549577Not Available752Open in IMG/M
3300006789|Ga0098054_1029275All Organisms → Viruses → Predicted Viral2160Open in IMG/M
3300006793|Ga0098055_1026069All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Oscillatoria → unclassified Oscillatoria → Oscillatoria sp. SIO1A72451Open in IMG/M
3300006793|Ga0098055_1180695Not Available805Open in IMG/M
3300006793|Ga0098055_1296111Not Available605Open in IMG/M
3300006802|Ga0070749_10535303Not Available636Open in IMG/M
3300006803|Ga0075467_10020989All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4207Open in IMG/M
3300006803|Ga0075467_10158786Not Available1291Open in IMG/M
3300006803|Ga0075467_10360284All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon763Open in IMG/M
3300006919|Ga0070746_10416832Not Available600Open in IMG/M
3300006924|Ga0098051_1111215Not Available732Open in IMG/M
3300006924|Ga0098051_1167747Not Available578Open in IMG/M
3300006925|Ga0098050_1019249Not Available1914Open in IMG/M
3300007229|Ga0075468_10089577Not Available988Open in IMG/M
3300007276|Ga0070747_1127733Not Available923Open in IMG/M
3300007276|Ga0070747_1128049Not Available922Open in IMG/M
3300007540|Ga0099847_1024066Not Available1971Open in IMG/M
3300007540|Ga0099847_1030921All Organisms → Viruses → Predicted Viral1719Open in IMG/M
3300007540|Ga0099847_1143444Not Available712Open in IMG/M
3300009024|Ga0102811_1038194Not Available1825Open in IMG/M
3300009086|Ga0102812_10311770Not Available856Open in IMG/M
3300009086|Ga0102812_10364942Not Available786Open in IMG/M
3300009434|Ga0115562_1124517Not Available988Open in IMG/M
3300009507|Ga0115572_10169999All Organisms → Viruses → Predicted Viral1271Open in IMG/M
3300010149|Ga0098049_1009752Not Available3282Open in IMG/M
3300010150|Ga0098056_1022574All Organisms → Viruses → Predicted Viral2236Open in IMG/M
3300010151|Ga0098061_1225562Not Available658Open in IMG/M
3300010316|Ga0136655_1104172Not Available856Open in IMG/M
3300010368|Ga0129324_10129006Not Available1068Open in IMG/M
3300012524|Ga0129331_1317534Not Available616Open in IMG/M
3300012524|Ga0129331_1401179Not Available1148Open in IMG/M
3300013010|Ga0129327_10165172Not Available1107Open in IMG/M
3300013010|Ga0129327_10178560Not Available1065Open in IMG/M
3300013010|Ga0129327_10407326Not Available722Open in IMG/M
3300013010|Ga0129327_10424261Not Available709Open in IMG/M
3300013010|Ga0129327_10432447Not Available703Open in IMG/M
3300013010|Ga0129327_10616673Not Available600Open in IMG/M
3300017727|Ga0181401_1077947Not Available866Open in IMG/M
3300017727|Ga0181401_1094703Not Available764Open in IMG/M
3300017735|Ga0181431_1015187Not Available1814Open in IMG/M
3300017742|Ga0181399_1011226All Organisms → Viruses → Predicted Viral2612Open in IMG/M
3300017742|Ga0181399_1044980Not Available1164Open in IMG/M
3300017742|Ga0181399_1068072Not Available907Open in IMG/M
3300017742|Ga0181399_1096694Not Available733Open in IMG/M
3300017743|Ga0181402_1116310Not Available686Open in IMG/M
3300017760|Ga0181408_1141503Not Available620Open in IMG/M
3300020166|Ga0206128_1044491All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2213Open in IMG/M
3300020166|Ga0206128_1105282Not Available1212Open in IMG/M
3300020182|Ga0206129_10001452Not Available32006Open in IMG/M
3300020182|Ga0206129_10007667Not Available10579Open in IMG/M
3300020182|Ga0206129_10039932Not Available3139Open in IMG/M
3300020185|Ga0206131_10179381Not Available1067Open in IMG/M
3300020187|Ga0206130_10397233Not Available554Open in IMG/M
3300021957|Ga0222717_10250511Not Available1029Open in IMG/M
3300022053|Ga0212030_1003972Not Available1596Open in IMG/M
3300022053|Ga0212030_1069813Not Available501Open in IMG/M
3300022072|Ga0196889_1000126All Organisms → cellular organisms → Bacteria25005Open in IMG/M
3300022164|Ga0212022_1010731All Organisms → Viruses → Predicted Viral1284Open in IMG/M
3300022164|Ga0212022_1079007Not Available504Open in IMG/M
3300022164|Ga0212022_1079660Not Available502Open in IMG/M
3300022169|Ga0196903_1000033Not Available23175Open in IMG/M
3300022169|Ga0196903_1004401All Organisms → Viruses → Predicted Viral1858Open in IMG/M
3300022169|Ga0196903_1037301Not Available568Open in IMG/M
3300022178|Ga0196887_1040201Not Available1247Open in IMG/M
(restricted) 3300024059|Ga0255040_10391581Not Available588Open in IMG/M
3300024183|Ga0228603_1060112Not Available590Open in IMG/M
3300024191|Ga0228636_1003115All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium4127Open in IMG/M
3300024191|Ga0228636_1132790Not Available548Open in IMG/M
3300024192|Ga0228637_1017300Not Available1485Open in IMG/M
3300024192|Ga0228637_1114838Not Available532Open in IMG/M
3300024231|Ga0233399_1019691Not Available2072Open in IMG/M
3300024242|Ga0228673_1087148Not Available555Open in IMG/M
3300024346|Ga0244775_10791254Not Available759Open in IMG/M
3300024415|Ga0228662_1044441Not Available1155Open in IMG/M
3300025070|Ga0208667_1002060Not Available6804Open in IMG/M
3300025085|Ga0208792_1010858Not Available2065Open in IMG/M
3300025085|Ga0208792_1012259All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1915Open in IMG/M
3300025108|Ga0208793_1011768All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED973393Open in IMG/M
3300025543|Ga0208303_1007325All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium3613Open in IMG/M
3300025543|Ga0208303_1027733Not Available1536Open in IMG/M
3300025570|Ga0208660_1000541Not Available14951Open in IMG/M
3300025570|Ga0208660_1093753Not Available668Open in IMG/M
3300025620|Ga0209405_1042565All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1621Open in IMG/M
3300025652|Ga0208134_1158900Not Available562Open in IMG/M
3300025658|Ga0209659_1042015Not Available1734Open in IMG/M
3300025705|Ga0209374_1004236All Organisms → cellular organisms → Bacteria10537Open in IMG/M
3300025806|Ga0208545_1083699Not Available865Open in IMG/M
3300025809|Ga0209199_1179617All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium757Open in IMG/M
3300032274|Ga0316203_1033111Not Available1503Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous31.43%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine13.33%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater9.52%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater7.62%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient7.62%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater6.67%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine4.76%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine3.81%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.86%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.86%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.90%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.90%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.90%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.95%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.95%
Estuary WaterEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water0.95%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300002040GS000c - Sargasso Station 3EnvironmentalOpen in IMG/M
3300002930Estuary water microbial communities from Pearl Estuary, Zhujiang, ChinaEnvironmentalOpen in IMG/M
3300004279Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10mEnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006399Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006925Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024183Seawater microbial communities from Monterey Bay, California, United States - 3DEnvironmentalOpen in IMG/M
3300024191Seawater microbial communities from Monterey Bay, California, United States - 45DEnvironmentalOpen in IMG/M
3300024192Seawater microbial communities from Monterey Bay, California, United States - 47DEnvironmentalOpen in IMG/M
3300024231Seawater microbial communities from Monterey Bay, California, United States - 43DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024415Seawater microbial communities from Monterey Bay, California, United States - 76DEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025085Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025620Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025658Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025705Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1005810033300000101MarineMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYSIVSNMEYYDCINLGVC*
DelMOSum2010_1006284813300000101MarineMKINECCLKDIKKREQKAQDISEARIFFVAGMALLLLLGVVGNMEYSDCINLGVC
DelMOSum2010_1007874723300000101MarineMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMSYFDCMNLGVC*
DelMOSum2010_1010030823300000101MarineMKINECCLKDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
DelMOSum2011_1012859933300000115MarineMRINECCLKDIKARENKREDIAQARIFFVASMALLILLGIVGNMEYNDCINLGVC*
JGI20157J14317_10009285113300001352Pelagic MarineMKINECCLKDLKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCIKLGVC*
JGI20157J14317_1012812233300001352Pelagic MarineMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCIKLGVC*
GOScombined01_10509183913300002040MarineKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGVC*
Water_10079513300002930Estuary WaterMRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYNDCINLGVC*
Ga0066605_1005272573300004279MarineMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYND
Ga0066605_1013445433300004279MarineMRINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0066224_105206523300004457MarineMRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGVC*
Ga0070743_1027688523300005941EstuarineMKINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYNDCVNLGVC*
Ga0075466_103805123300006029AqueousMKINECCLKDIKSRENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0075495_117010423300006399AqueousMKINECCLKDIKAREAKLQEVAESRAGLVGAAILLILYGIASNMEYYDCVNLGVC*
Ga0075495_151842423300006399AqueousMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYNDCINLGVC*
Ga0075495_154957723300006399AqueousMKINQCCKKEIKDREKKLQDIAEARVFFVASMALLILLSIVGNMEYSDCINLGVC*
Ga0098054_102927513300006789MarineASKTKGNNMKINECCLNDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0098055_102606913300006793MarineINECCLNDIKKREQKSQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0098055_118069513300006793MarineMKINKCCLSDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0098055_129611123300006793MarineMKFTKGNHMKINECCLNDIKKREQKSQDIAEARKFFVGIMSLFILLAIVGNMEYN
Ga0070749_1053530323300006802AqueousMRINECCLKDIKAREAKLQEVAESRAGLVGAAILLILYGIVSNMEYYDCVNLGVC*
Ga0075467_1002098983300006803AqueousNNMKINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0075467_1015878623300006803AqueousMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGVC*
Ga0075467_1036028433300006803AqueousMKINECCLKDIKSRENKREDIAEARVFFVASMALLILLSIVGNME
Ga0070746_1041683213300006919AqueousCCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGVC*
Ga0098051_111121523300006924MarineVGEDKSNNRPLRGATKGNNMRINECCSKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC*
Ga0098051_116774723300006924MarineMKFTKGNHMKINECCLNDIKKREQKSQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0098050_101924953300006925MarineMRINECCSKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC*
Ga0075468_1008957723300007229AqueousMRINECCLKDIKAREAKREDIAQARIFFVASMALLILLGIVGNMEYNDCINLGVC*
Ga0070747_112773323300007276AqueousMKINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYNDCINLGVC*
Ga0070747_112804933300007276AqueousMKINQCCLKDIKARENKREDIAEARIFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0099847_102406633300007540AqueousMRINECCLKDIKARENKREDIAEARIFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0099847_103092133300007540AqueousMKINECCLKDIKARENKREDIAEARIFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0099847_114344423300007540AqueousMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0102811_103819423300009024EstuarineMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYNDCVNLGVC*
Ga0102812_1031177013300009086EstuarineMKINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0102812_1036494213300009086EstuarineNRPLRGATKENNMKINECCLKDIKARENKLQDIAEARVFFVASMALLILLSIVGNMEYNDCVNLGVC*
Ga0115562_112451713300009434Pelagic MarineMKINECCLKDIKAREAKLQEVAESRTGFVGAAILLILYGIVSNMEYYDCIKLGVC*
Ga0115572_1016999933300009507Pelagic MarineMRINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC*
Ga0098049_100975273300010149MarineMRINECCLNDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC*
Ga0098056_102257453300010150MarineMKINECCLNDIKKREQKSQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0098061_122556223300010151MarineMKINKCCLNDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC*
Ga0136655_110417213300010316Freshwater To Marine Saline GradientMKINECCLNDIKKREQKAQDISEARIFFVAGMALLLLLGVVGNMEYYDCVN
Ga0129324_1012900613300010368Freshwater To Marine Saline GradientMKINECCLNDIKKREKKAQDISEARIFFVAGMALLLLLGVVGNMEYYDCVNLGVC*
Ga0129331_131753423300012524AqueousMKINECCLKDIKARENKREDIAEARIFFVASMALLILLSIVGNMEYSD
Ga0129331_140117933300012524AqueousMRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIASNMEYYDCINLGVC*
Ga0129327_1016517213300013010Freshwater To Marine Saline GradientMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGV
Ga0129327_1017856023300013010Freshwater To Marine Saline GradientMRINECCLKDIKARENKREDIEEARIFFVASIALLILLSIVGNMEYSDCVNLGVC*
Ga0129327_1040732613300013010Freshwater To Marine Saline GradientRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCINLGVC*
Ga0129327_1042426133300013010Freshwater To Marine Saline GradientMRINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGV
Ga0129327_1043244713300013010Freshwater To Marine Saline GradientSNRPLRGATKGNNMKINECCLKDIKARENKREDIAQARIFFVASMALLILLSIVGNMEYNDCINLGVC*
Ga0129327_1061667313300013010Freshwater To Marine Saline GradientMKINECCLKDIKARENKREDIAEARVFFVASMALLI
Ga0181401_107794723300017727SeawaterMKINECCLKDIKARENKLQDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0181401_109470323300017727SeawaterMKINECCLKDIKAREAKLQEIAEGRQFFVGAMALLILFAIVGNMEYSDCINLGVC
Ga0181431_101518723300017735SeawaterVGEDKSNNRPLRGATKGNNMRINECCSKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC
Ga0181399_101122623300017742SeawaterMKINECCLKDIKARENKLQDIAEARVFFVASMALLILLSIVGNMEYNDCINLGVC
Ga0181399_104498033300017742SeawaterMKINQCCKKEIKDREKKLQDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0181399_106807233300017742SeawaterMKINECCLKDIKAREAKLQEIAEGRQFFVMAMALLILFAIVGNMEYSDCINLGVC
Ga0181399_109669423300017742SeawaterMKINECCLSDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC
Ga0181402_111631023300017743SeawaterMKINQCCKKEIKDREKNLQDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0181408_114150323300017760SeawaterMKINECCLKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC
Ga0206128_104449113300020166SeawaterMKINECCLKDIKARENKREDIAEARIFFVASMALLIL
Ga0206128_110528233300020166SeawaterMRINECCLKDIKARENKREDIAQARIFFVASMALLILLGIVGNMEYNDCINLGVC
Ga0206129_10001452293300020182SeawaterMRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGVC
Ga0206129_10007667123300020182SeawaterMKINECCLKDIKARENKREDIAEARIFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0206129_1003993253300020182SeawaterMKINECCLKDIKAREAKLQEVAESRAGLVGAAILLILYGIASNMEYYDCVNLGVC
Ga0206131_1017938133300020185SeawaterMRINECCLKDIKARENKREDIAQARIFFVASMALLILLGIVGNMEYSDCINLGVC
Ga0206130_1039723323300020187SeawaterMKINECCLKDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC
Ga0222717_1025051113300021957Estuarine WaterMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNM
Ga0212030_100397243300022053AqueousMRINECCLKDIKARENKREDIAEARIFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0212030_106981313300022053AqueousMKINECCLNDIKKREQKAQDISEARIFFVAGMALLLLLGVVGNMEYY
Ga0196889_1000126293300022072AqueousMKINECCLKDIKSRENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0212022_101073143300022164AqueousMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGV
Ga0212022_107900713300022164AqueousMKINQCCKKEIKDREKKLQDIAEARVFFVASMALLILLSIVGNMEYSDCINLGVC
Ga0212022_107966023300022164AqueousNMKINECCLKDIKSRENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0196903_100003393300022169AqueousMKINECCLNDIKKREQKAQDISEARIFFVAGMALLLLLGVVGNMEYYDCVNLGVC
Ga0196903_100440173300022169AqueousMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0196903_103730113300022169AqueousECCLNDIKKREQKAQDISEARIFFVAGMALLLLLGVVGNMEYSDCINLGVC
Ga0196887_104020133300022178AqueousMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCVNLGVC
(restricted) Ga0255040_1039158123300024059SeawaterMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYNDCVNLGVC
Ga0228603_106011223300024183SeawaterMKINECCLKDIKKREQKAQDIAEARKFFVGIMSLLILLAI
Ga0228636_100311583300024191SeawaterMKINECCLKDIKAREAKLQEIAEGRQFFVWAMALLILFAIVGNMEYSDCINLGVC
Ga0228636_113279023300024191SeawaterMRINECCLKDIKKREQKAQDIAEARKFFVGIMSLLILLAIVGNMEYNDCINLGVC
Ga0228637_101730023300024192SeawaterMKINECCLNDIKKREQKAQDIAEARKFFVGIMSLFILLAIVGNMEYNDCINLGVC
Ga0228637_111483823300024192SeawaterMRINECCLKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLVVC
Ga0233399_101969133300024231SeawaterMKINECCLKDIKKREQKAQDIAEARKFFVGIMSLLILLAIVGNMEYNDCINLGVC
Ga0228673_108714813300024242SeawaterCLKDIKKREQKAQDIAEARKFFVGIMSLLILLAIVGNMEYNDCINLGVC
Ga0244775_1079125413300024346EstuarineMKINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYSDCVN
Ga0228662_104444143300024415SeawaterMKINECCLKDIKAREAKLQEIAEGRQFFVWAMALLILFAIVGNMEYSDCIN
Ga0208667_100206083300025070MarineMKINECCLNDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC
Ga0208792_101085813300025085MarineKGNNMKINECCLKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC
Ga0208792_101225963300025085MarineMKINECCLKDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNME
Ga0208793_101176893300025108MarineMRINECCLNDIKKREQKAQDIAEARKFFVGAMALLILFAIVGNMEYNDCINLGVC
Ga0208303_100732563300025543AqueousMRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIASNMEYYDCVNLGVC
Ga0208303_102773313300025543AqueousMKINECCLNDIKKREQKAQDISEARIFFVAGMALLLLLGVVGNMEY
Ga0208660_100054173300025570AqueousMKINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYNDCINLGVC
Ga0208660_109375323300025570AqueousMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYSIVSNMEYYDCINLGVC
Ga0209405_104256523300025620Pelagic MarineMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCIKLGVC
Ga0208134_115890033300025652AqueousMRINECCLKDIKAREAKREDIAQARIFFVASMALLILLGIVGNM
Ga0209659_104201523300025658MarineMRINECCLKDIKARENKREDIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0209374_1004236133300025705MarineMRINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYSDCVNLGVC
Ga0208545_108369923300025806AqueousMKINECCLKDIKARENKREEIAEARVFFVASMALLILLSIVGNMEYNDCVNLGVC
Ga0209199_117961713300025809Pelagic MarineIKGNNMKINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCIKLGVC
Ga0316203_103311123300032274Microbial MatMRINECCLKDIKAREAKLQEVAESRAGFVGAAILLILYGIVSNMEYYDCINLGVC


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