Scaffold Ga0247669_1000135

Overview

Basic Information

• Taxon OID: 3300024182
• Scaffold ID: Ga0247669_1000135
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39156
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (71.74%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075253	Metagenome / Metatranscriptome	119	Y
F087825	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_100013512	F075253	N/A	VLDLLPAFGHLNPRLAAFLMMVLLVAAAIPLALGWTRILPPEREPFSRPDLPRKKPKPDLFALFLLLNVSLSLVAAIPRIADTLHLDSLLGLLRAAWAEQVAMVSLVWLAFIPAFAAAYSAVRSNPIRAQLIVGGILVLALWLLSPTLLGSLNSRP
Ga0247669_100013514	F087825	N/A	MSLKGLTDLYRKLVHAFGDPIPISKFGFSVEEAERLFSGFEEDYHIGRFFHFTEQHAAQRYSVNGFPATHVSIDPEIESIL