Scaffold Ga0247669

Basic Information
Taxon OID	3300024182 Open in IMG/M
Scaffold ID	Ga0247669_1000007 Open in IMG/M
Source Dataset Name	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024182 Open in IMG/M

Scaffold ID

Ga0247669_1000007 Open in IMG/M

Source Dataset Name

Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	290801
Total Scaffold Genes	273 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	211 (77.29%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

290801

Total Scaffold Genes

273 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

211 (77.29%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	40.4449	Long. (^o)	-87.0297	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

40.4449

Long. (^o)

-87.0297

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002848	Metagenome / Metatranscriptome	526	Y
F011416	Metagenome / Metatranscriptome	291	Y
F024595	Metagenome / Metatranscriptome	205	Y
F033122	Metagenome / Metatranscriptome	178	Y
F050739	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247669_1000007189	F011416	AGGTGG	MNFTKKITWQLILAAVGVSLFVVSAARAQEITNTDFETPATSVSGNFNNPSAAAANTAVNNAQADYAAVSEASILQANQQEEVSMASFPRTLGSLIAIGVLLIACGMLWKSAGQRQNDTLKTHNALSTRKHPLPSRKAQALNS
Ga0247669_1000007211	F002848	GAGG	MRKQLWILSCAMLAIPVLCAGQNPQPKPVSKKSSSSTAKSATTTPKPANPSTKIVYAELTIGELIAEDANRWSDKMSAHAAVSGFVTQVAKGPDGDTDVRICENPKIEGMDRTRCIVAKCISRLPCDLPPVGRPITVKGITRYDAKVGTHWWEIHPVEETEK
Ga0247669_1000007232	F033122	GGAGG	MTHSETQTLTQTGVVEVSGWDENQVFFVERSELGWDEYAGKHVTLTRMLSESSIVFVRPIQPTALHRPNPIPYEAEFVGCSPEGHHQFRLNEVLPRHNRENFTVN
Ga0247669_100000736	F024595	N/A	MAAKIIRCTGRRSCLVRWCSATAILAVLALGCAIRLRSDTRALLLPQLKPGQTLLYEIHGRLNRSVKTESRVSSFSGPQKLQGDLSSQIRLSVQRVLAGKPHPRATVQTELLPGPPAQANAPAAPPQKLTFDILAKGQLGNIKGLDDLSPEQRLLWQFWVARFAFGWILPPSRLKPGDKWKFEESELNDSLIAGLVWERETTYARDDQCPVLPAETCAVFLTQSTLKQKSSSKDSTPESYRLHELKTLGSAKGQNQAITYISQKTGLVLRANEDIQQSMDVTVMKSDGTNGVHYAVEATSHLETLLVPQLNP
Ga0247669_10000074	F050739	AGGAG	MASPAMSEKFRAVVCRHCGKPIRVPGLITKKEREFQGLTDSGDMHYHLISRVFNVRCRSCERESVYSINQIVDYPYPLPSSATDPKAAAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247669_1000007

Overview

Ecosystem & Geography

Associated Families

Sequences