NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228668_1032457

Scaffold Ga0228668_1032457


Overview

Basic Information
Taxon OID3300024180 Open in IMG/M
Scaffold IDGa0228668_1032457 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 82D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016663Metagenome / Metatranscriptome245N
F062669Metagenome / Metatranscriptome130N
F104955Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0228668_10324571F104955N/ANNIHFTENCSMPFNKDVSDHFYELGLDLLFLGYSREDVELWIQQAEEDESYEECDGLLRALNYKSNAEDDYYYGEEEEDFI
Ga0228668_10324572F062669GAGMIITMAKKKKTSFNYYNTNNDAQSHCFKRGYVIYPEAFKDGWRVSIELGHRKHTYPEVLSLTEAYIKIWKEYEKIQNRDNNGKT
Ga0228668_10324573F016663GAGMAKLRTYNVEAAKQLADKFVQITGLDLTNTSRHQEQAYFRALFYKVMCDINGMNDRMISEWFGDMGVKRNRSSIFHALRKIDIYYESFVRFRNVYDLFFDDKKKERERIENKKSERVRRINERIDRKLDELDRNKIHELADVIPEDRIDEIYEMMTLRMKSWAWKSKDRCEVIQSSTSMDGMCW
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