Scaffold Ga0247694_1000140

Overview

Basic Information

• Taxon OID: 3300024178
• Scaffold ID: Ga0247694_1000140
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22217
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F011861	Metagenome / Metatranscriptome	286	Y
F053586	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247694_100014015	F053586	AGAAGG	MERIYDRLERIRQLWKKLEVTKPNTNEYAAIMNQIRVLSEEYRALIEAPKKLKE
Ga0247694_100014017	F000173	GGAGG	MKTFEVQFRYRDRKEETIQSAVKVEASNLPGAVGKAAREFVKGLDRKQRFDMNKNGLEITAKPVATATEAPEKTSAEAAAN
Ga0247694_10001409	F011861	AGGA	MARFQYSVTTKASPALAWLVFSDLHRWNNFANVYGELRWRDGNPWEPGSRLQIELLRPVNAVIDHVITTCVPGKKVGWIDHALGVAMAQWVTFEDRPMEGTRVHTWGEVIHSGITIGGRTVEELIASFTRTWYESFRIACNQLVLPGGAGPGEASFATQ