Scaffold Ga0247694_1000012

Overview

Basic Information

• Taxon OID: 3300024178
• Scaffold ID: Ga0247694_1000012
• Source Dataset Name: Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK35
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 118720
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 83 (75.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 40.4449
  • Long. (^o): -87.0297

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075253	Metagenome / Metatranscriptome	119	Y
F087825	Metagenome	110	Y
F101952	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247694_100001241	F101952	GAGG	MKSILMLISGGLCITGGLLHASGFPVIHGEIAKATATGHLADVVDLAWVFMSMGLLTFGAILITCGLQMRKRNYGGKAMAGWVAVCLTLFSGGAMIRFGFNWHFLYFLIVGVTAALACLPDKRTTS
Ga0247694_100001250	F075253	N/A	VLDLLPAFGHLNPRLAAFLVMVLLVAAAIPLALGWTRILPPEREPFSRPDLPRKKPKLDLFALFLLLNVSLSLVAAIPRIADTLHLDSLLGLLPATWAEQVAMVSLIWLVLIPAFAAAYSAVRSNPIRAQLIVGGILVLALWLLSPTLLGSLNSRP
Ga0247694_100001252	F087825	GAGG	MPSEGTRRAPSMSLKGLTDLYRKLVHAFGDPIPISKFGFSVEEAERLFSGFEEDYHIGRFFHFTEQPAAQRYSVNGFPATHVSIDPEIESIL