Scaffold Ga0255040_10031941

Overview

Basic Information

• Taxon OID: 3300024059
• Scaffold ID: Ga0255040_10031941
• Source Dataset Name: Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1872
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 49.2166667
  • Long. (^o): -123.5333333
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042800	Metagenome	157	Y
F068853	Metagenome	124	Y
F085723	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255040_100319413	F085723	N/A	MLSKIRFNLLHPTLNAMQQQAAYQLSEIEGWDVEGKTAFKDGLTLHLLENGNALTSPTRLSTK
Ga0255040_100319414	F042800	N/A	MKLHIYKSTPFGLERVNDNPLTIAEAKAILMVNPSLTVRDAQSTSYEVLHMPLDWQDEEPTAREMSIARNFKAGVIIALVVSAALLIAEILTR
Ga0255040_100319416	F068853	N/A	MTSLAKYNKSQLAILRAVKDDLKYYLGKEIGHDPQGDPEALTELETRLAVWLTIGGGGAWLRSLPEVNEEFTK