Scaffold Ga0255050_10001223

Overview

Basic Information

• Taxon OID: 3300024052
• Scaffold ID: Ga0255050_10001223
• Source Dataset Name: Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3515
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0528611
  • Long. (^o): -123.8211389
  • Depth (m): 425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057671	Metagenome / Metatranscriptome	136	Y
F075974	Metagenome	118	Y
F093707	Metagenome	106	N
F099119	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255050_1000122310	F093707	N/A	MKKTLRFVRIEDIRFPILEYKDNKIDAKELVTKLEKLINKYE
Ga0255050_1000122311	F057671	GGA	MSITKELDRIAFDVFMDVKNHMYKAIAKELEYSDLEDINDNELHEYVMNQVINRFIQK
Ga0255050_100012236	F099119	N/A	MITLLEQLRPEIAEALEKNRDKYDYSITDLYNKLDTSYLYADLSIRDMRDLTLYTDTDYHNWDSMDWRFGTKLFVQEKRG
Ga0255050_100012238	F075974	AGGA	MGKRLERGLYIIIFSTMSFFLGVFYTFYEIDQRIWNEELVKARDIETRYINYQQKRCYKKSDLDLIILGEIQK