Scaffold Ga0257060_10247

Overview

Basic Information

• Taxon OID: 3300023495
• Scaffold ID: Ga0257060_10247
• Source Dataset Name: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_77C
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Irvine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68687
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (23.16%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location

• Location Name: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F080163	Metagenome	115	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257060_1024723	F094005	N/A	MKKEVIKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETTEKVITLDKKLKKLIEKLNE
Ga0257060_1024725	F032312	N/A	MPKIKDYDEDLSAHKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIKGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0257060_1024726	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLEHSGTAMGMCNIFKNQDHEFWYRVIKPWFQPERFGITHLWFPSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRISGYWFPYYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0257060_1024727	F080163	N/A	MKTIKFLQESFETKERFQQEISFKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVDEFKEKKNNFCDAKQFLESINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSILIQGFYNYTHRDLSFSIKLESEILDSEIELLQRKLNLIREEICELIGVNPNLEKQGHENNYVFNLNIDSDNQIGFFLQETEL
Ga0257060_1024731	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHHKR
Ga0257060_1024737	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDDFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0257060_1024740	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYIENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFIV
Ga0257060_1024742	F064817	N/A	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRNYDTDMLFLSHSFTYILDQTEEEGRRICIQNIIERNINQENQDENETI