Scaffold Ga0257039

Basic Information
Taxon OID	3300023488 Open in IMG/M
Scaffold ID	Ga0257039_10192 Open in IMG/M
Source Dataset Name	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_18B
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of California, Irvine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023488 Open in IMG/M

Scaffold ID

Ga0257039_10192 Open in IMG/M

Source Dataset Name

Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_18B

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of California, Irvine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67272
Total Scaffold Genes	95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (20.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

67272

Total Scaffold Genes

95 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (20.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location
Location Name	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Northridge, California

Coordinates

Lat. (^o)

34.2381

Long. (^o)

-118.5301

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0257039_1019254	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYRAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0257039_1019256	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISNKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0257039_1019259	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0257039_1019266	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNISTVPDLEKPIEIQVSTTRQIPLEQNKEVQTIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHR
Ga0257039_1019271	F032312	N/A	MSRIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0257039_10192

Overview

Ecosystem & Geography

Associated Families

Sequences