Sample 3300023488

Overview

Basic Information
IMG/M Taxon OID	3300023488 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133482 \| Gp0296391 \| Ga0257039
Sample Name	Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_18B
Sequencing Status	Permanent Draft
Sequencing Center	University of California, Irvine
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	89253130
Sequencing Scaffolds	9
Novel Protein Genes	14
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Child Gut Microbiome
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut

Location Information
Location	USA: Northridge, California
Coordinates	Lat. (^o)	34.2381	Long. (^o)	-118.5301	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044554	Metagenome	154	N
F044555	Metagenome / Metatranscriptome	154	N
F047125	Metagenome / Metatranscriptome	150	N
F047126	Metagenome	150	N
F064817	Metagenome	128	N
F068855	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F088920	Metagenome	109	Y
F101355	Metagenome	102	N
F101356	Metagenome	102	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Family

Category

Number of Sequences

3D Structure?

F032312

Metagenome / Metatranscriptome

180

F044554

Metagenome

154

F044555

Metagenome / Metatranscriptome

154

F047125

Metagenome / Metatranscriptome

150

F047126

Metagenome

150

F064817

Metagenome

128

F068855

Metagenome

124

F074899

Metagenome / Metatranscriptome

119

F076189

Metagenome

118

F088920

Metagenome

109

F101355

Metagenome

102

F101356

Metagenome

102

F101357

Metagenome / Metatranscriptome

102

F105375

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0257039_10192	All Organisms → cellular organisms → Bacteria	67272	Open in IMG/M
Ga0257039_10766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	24756	Open in IMG/M
Ga0257039_10812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	23633	Open in IMG/M
Ga0257039_11718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	10210	Open in IMG/M
Ga0257039_11797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9642	Open in IMG/M
Ga0257039_15010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3174	Open in IMG/M
Ga0257039_16476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	2561	Open in IMG/M
Ga0257039_16697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2487	Open in IMG/M
Ga0257039_17838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2179	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0257039_10192

All Organisms → cellular organisms → Bacteria

67272

Open in IMG/M

Ga0257039_10766

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

24756

Open in IMG/M

Ga0257039_10812

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis

23633

Open in IMG/M

Ga0257039_11718

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae

10210

Open in IMG/M

Ga0257039_11797

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

9642

Open in IMG/M

Ga0257039_15010

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

3174

Open in IMG/M

Ga0257039_16476

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158

2561

Open in IMG/M

Ga0257039_16697

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

2487

Open in IMG/M

Ga0257039_17838

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii

2179

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0257039_10158	Ga0257039_101582	F101356	VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIMQ
Ga0257039_10192	Ga0257039_1019254	F064817	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYRAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0257039_10192	Ga0257039_1019256	F105375	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISNKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0257039_10192	Ga0257039_1019259	F101357	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF
Ga0257039_10192	Ga0257039_1019266	F044555	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNISTVPDLEKPIEIQVSTTRQIPLEQNKEVQTIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHR
Ga0257039_10192	Ga0257039_1019271	F032312	MSRIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0257039_10766	Ga0257039_1076622	F047126	MTNILQTQAGFKSKSLGSLCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC
Ga0257039_10812	Ga0257039_108122	F044554	VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFFSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL
Ga0257039_11718	Ga0257039_1171813	F068855	VEVQGPQVRKSLAPQGLQAEKESENVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW
Ga0257039_11797	Ga0257039_1179716	F101355	MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFLFFLIYLKKIDFFQNIA
Ga0257039_15010	Ga0257039_150104	F088920	VSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFAGLSVFSPQTSPKISGQTSLHQPWLSPYCLFKD
Ga0257039_16476	Ga0257039_164763	F074899	MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSK
Ga0257039_16697	Ga0257039_166972	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL
Ga0257039_17838	Ga0257039_178382	F047125	MDVALLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS

Scaffold ID

Protein ID

Family

Sequence

Ga0257039_10158

Ga0257039_101582

F101356

VGELIPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIMQ

Ga0257039_10192

Ga0257039_1019254

F064817

MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYRAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKRDYDTDMLFLTHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI

Ga0257039_10192

Ga0257039_1019256

F105375

MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILDYSNNLMNLLVNAYVENQCLALSAMISNKQDGFAIYSFLFQTPDTSNGAADALVSFAMNFTDGEANIKSINRISSNIMQITFTV

Ga0257039_10192

Ga0257039_1019259

F101357

MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDNFYNYSNASNIHYEGGKFPSMLTIQLFNLEF

Ga0257039_10192

Ga0257039_1019266

F044555

MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNISTVPDLEKPIEIQVSTTRQIPLEQNKEVQTIIYNNLYDTLIDELKSTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHR

Ga0257039_10192

Ga0257039_1019271

F032312

MSRIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS

Ga0257039_10766

Ga0257039_1076622

F047126

MTNILQTQAGFKSKSLGSLCGFQGSLTQNPAALVETDDIFDVSDTPYGFSGLNTLRAAGVPHPPPPFAQRFIACFCSQTAAASQSKSAHILSPLESPCILCSLLRYFHILSKKLQKTC

Ga0257039_10812

Ga0257039_108122

F044554

VLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFFSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL

Ga0257039_11718

Ga0257039_1171813

F068855

VEVQGPQVRKSLAPQGLQAEKESENVNVRNAGWLHSFDADYHYRGSDLHYHVNVSAALSEGGAVW

Ga0257039_11797

Ga0257039_1179716

F101355

MIEPPFQHGIADMAFWFIQWYLPSAQPPQPKGAGAVFSYVLPRCSYFFKIFVTEMSIFICMHKCLAQTGRLRGSSCHIVVAAKRACACTLLWISDHFYKKLLPYVLFLFFLIYLKKIDFFQNIA

Ga0257039_15010

Ga0257039_150104

F088920

VSANLHHYPAFWAGLILHLILHFSQKVAIFAPKRAILLIFVPTLFFAGLSVFSPQTSPKISGQTSLHQPWLSPYCLFKD

Ga0257039_16476

Ga0257039_164763

F074899

MSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSK

Ga0257039_16697

Ga0257039_166972

F076189

VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL

Ga0257039_17838

Ga0257039_178382

F047125

MDVALLLMVLGVMLSGFRAADALDHMRKEIIRQEGKRRGWWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023488: Human gut microbial communities from healthy child feces in Northridge, California, USA - CDI_18B

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences