Basic Information | |
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Taxon OID | 3300023310 Open in IMG/M |
Scaffold ID | Ga0256722_133012 Open in IMG/M |
Source Dataset Name | Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 674-BM1-C3 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Delaware |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 900 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Loihi Seamount, Hawaii | |||||||
Coordinates | Lat. (o) | 18.901418 | Long. (o) | -155.258191 | Alt. (m) | Depth (m) | 1179.43 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008189 | Metagenome / Metatranscriptome | 337 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256722_1330122 | F008189 | AGGAGG | MDYKEELKRLQEGSNYWKPKVGQYKLKALSELEEADPFVKQREGQEDEVHPQMKIKVTIDGEEKLWTFGKGKTPASTYGQLVELASKHANQLTNVEFSVVVKSDGTKNDYTIVN |
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