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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300023310 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133538 | Gp0295814 | Ga0256722 |
| Sample Name | Hydrothermal Fe-rich mat microbial community from Loihi Seamount, Hawaii, USA - 674-BM1-C3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Delaware |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 97362260 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 15 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Predicted Viral | 1 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Hydrothermal Fe-Rich Mat Reference Genomes |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Fe-Rich Mat → Hydrothermal Fe-Rich Mat Reference Genomes |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Surface (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Loihi Seamount, Hawaii | |||||||
| Coordinates | Lat. (o) | 18.901418 | Long. (o) | -155.258191 | Alt. (m) | N/A | Depth (m) | 1179.43 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003617 | Metagenome / Metatranscriptome | 477 | Y |
| F008189 | Metagenome / Metatranscriptome | 337 | Y |
| F020998 | Metagenome / Metatranscriptome | 221 | Y |
| F022976 | Metagenome | 212 | Y |
| F027204 | Metagenome | 195 | N |
| F029285 | Metagenome / Metatranscriptome | 189 | Y |
| F031891 | Metagenome / Metatranscriptome | 181 | N |
| F033078 | Metagenome | 178 | Y |
| F050671 | Metagenome / Metatranscriptome | 145 | N |
| F088125 | Metagenome | 109 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0256722_109330 | All Organisms → Viruses → Predicted Viral | 2158 | Open in IMG/M |
| Ga0256722_114415 | Not Available | 1574 | Open in IMG/M |
| Ga0256722_115001 | Not Available | 1528 | Open in IMG/M |
| Ga0256722_127191 | Not Available | 1021 | Open in IMG/M |
| Ga0256722_131248 | Not Available | 933 | Open in IMG/M |
| Ga0256722_133002 | Not Available | 901 | Open in IMG/M |
| Ga0256722_133012 | Not Available | 900 | Open in IMG/M |
| Ga0256722_135318 | Not Available | 861 | Open in IMG/M |
| Ga0256722_145202 | Not Available | 734 | Open in IMG/M |
| Ga0256722_145592 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | 731 | Open in IMG/M |
| Ga0256722_146473 | Not Available | 722 | Open in IMG/M |
| Ga0256722_149873 | Not Available | 690 | Open in IMG/M |
| Ga0256722_152191 | Not Available | 670 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0256722_109330 | Ga0256722_1093305 | F088125 | MYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDVVVQQHFMEHAIAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFMLISGVAFMIHMIKEQTPHHPFYIRENNEDD |
| Ga0256722_114415 | Ga0256722_1144153 | F088125 | MMYLLDAGRVALFSIFLVATLRFFYLSWQTRNTHSDDIVVQQHFMEHVVAAAFSFMGSLIGTLYSIVHLFSTEQGELSELPFTVAIVFLLVSGVAFMLHMIKEQTPHHPFYIRENHEDD |
| Ga0256722_115001 | Ga0256722_1150013 | F088125 | MMYVLDAGRVSLFSIFLVATLRFFYLSWQTRNTHSDDVVVQQHFMEHIVAAAFAFMGSLIGTLYSIVHLFSTDQGELSELPFTVSLVFLLVSGGAFMVHMIKEQTPHHPFYIRENHEDD |
| Ga0256722_127191 | Ga0256722_1271913 | F029285 | RRGSYTGAIDMKDSADYNLYKCPYEHLKKECGHELHGPEGYENTYGVCCSCGFRAPVFYLDPEDLRLEKKALIDGVEI |
| Ga0256722_131248 | Ga0256722_1312483 | F088125 | DAGRVALFSIFLVATLRFFYLSWQTRNTHSDDVVVQQHFMEHIVAAAFAFMGSLIGTLYSIVHLFSTDQGELSELPFTVALIFLLVSGGAFMVHMIKEQTPHHPFYIRENHEDD |
| Ga0256722_133002 | Ga0256722_1330021 | F020998 | GSNTPTASRAGRAGGYLMQTNARTSTRPGYIFDDHAALMLALFDLLDQAAVDYDRSEDVVDDFQAYLKDWARRRDEKPER |
| Ga0256722_133012 | Ga0256722_1330122 | F008189 | MDYKEELKRLQEGSNYWKPKVGQYKLKALSELEEADPFVKQREGQEDEVHPQMKIKVTIDGEEKLWTFGKGKTPASTYGQLVELASKHANQLTNVEFSVVVKSDGTKNDYTIVN |
| Ga0256722_135318 | Ga0256722_1353182 | F088125 | MMYLLDAGRVALFSIFLVATLRFFYLAWQTHNAHSDDVVVQQHFMEHAVAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFILISGVAFMIHMIKEQTPHHPFYIRENNEDD |
| Ga0256722_145202 | Ga0256722_1452022 | F088125 | MMYLLDAGRVVLFAAFLVATLQFFYLSWQTRNAHSDDVVVQQHFLEHAIAAAFAFIGSLLGVLYSIVHLFSVEQGVLSETPFTVSMLFMLISGVAFMIHMIKEQTPHHPFY |
| Ga0256722_145592 | Ga0256722_1455921 | F003617 | YPRVFSDTDAGLLLNEGSDTAFNQTYTLDPDMTAIIYKISLNFCAVLTCSAYTNGGLSIGGLHIKITERSTNDRLLYENTFQSGAATLAATGTSMHWFTQDIVETIKVNKGNPIDIQVNLVTVVTGTNTRQEGYAPVAPLLKTAVMKRFYESGMSLHLHPDLSHADGVFKYSQQRVSLLG |
| Ga0256722_145592 | Ga0256722_1455922 | F031891 | LASEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKEQGSMHTDSQIDDLINNA |
| Ga0256722_146473 | Ga0256722_1464731 | F050671 | LPFWDFLTRKQEPGDVAVAVPLNYDVGQATYPDASFESFATEGYAKSEIVHACIRELAVSAASPRYYVQAPATGGGAVEITSGLLHDLTSKPNPTSDWYSFV |
| Ga0256722_146473 | Ga0256722_1464732 | F022976 | VKPLTVKTKDWTAGRRWAKRNAIATPGVTYTLLQDGRLLSYRYENGLMYCTGPTKRMKPYHPRWLTASEPMC |
| Ga0256722_149873 | Ga0256722_1498731 | F027204 | MRNDHKSWKTGVRVAKQFGGALAGRLGAAARPIARTLGYKKGERVYKKGGNAK |
| Ga0256722_152191 | Ga0256722_1521911 | F033078 | MNKWKEIKALPNHLQPKILSAVAYVNECAPNMSKSVERINTLMKHLSDKEMMFV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |