Scaffold Ga0256702_11067304

Overview

Basic Information

• Taxon OID: 3300023300
• Scaffold ID: Ga0256702_11067304
• Source Dataset Name: Food waste microbial community from Durham, Ontario, Canada. Combined Assembly of Gp0238881, Gp0242100
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Toronto
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 579
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Aerobic → Unclassified → Unclassified → Food Waste → Metagenomes From Anaerobic Digester Of Solid Waste

Source Dataset Sampling Location

• Location Name: Durham, Ontario, Canada
• Coordinates
  • Lat. (^o): 44.1763
  • Long. (^o): -80.8185

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065522	Metagenome	127	N
F096761	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256702_110673041	F065522	N/A	VPFFFSLPLLWTVLPSDLVLFDYLLLGMTRQIAILEEKHSRDQAEMVQRCADFEEKYSQSQTELNQVSAALDDANALSSSLHARLDSEKVTYKTVPRLAMLLLFAWILKELIFACRKKNVSLL
Ga0256702_110673042	F096761	N/A	MLIRSSHQALVDGMASQLRSQGAFIPEVASSLEHWNPVSLHRRVSELEATNAG