Scaffold Ga0256630_10271

Overview

Basic Information

• Taxon OID: 3300023289
• Scaffold ID: Ga0256630_10271
• Source Dataset Name: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_193A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of California, Irvine
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36424
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Source Dataset Sampling Location

• Location Name: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076189	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256630_1027117	F076189	N/A	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLCAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL