3300023289: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_193A

Overview

Basic Information

• IMG/M Taxon OID: 3300023289
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0133482 | Gp0295801 | Ga0256630
• Sample Name: Human gut microbial communities from healthy child feces in Northridge, California, USA -- CDI_193A
• Sequencing Status: Permanent Draft
• Sequencing Center: University of California, Irvine
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68509110
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Child Gut Microbiome
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut → Child Gut Microbiome

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: Northridge, California
• Coordinates
  • Lat. (^o): 34.2381
  • Long. (^o): -118.5301
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032286	Metagenome / Metatranscriptome	180	Y
F047125	Metagenome / Metatranscriptome	150	N
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F092227	Metagenome	107	N
F099451	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0256630_10008	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	369950
Ga0256630_10044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	151847
Ga0256630_10271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	36424
Ga0256630_11345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	7971
Ga0256630_14816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2897
Ga0256630_15814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. ATCC BAA-442	2512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0256630_10008	Ga0256630_10008228	F099451	MAIDKIKTVGQLRKVIENLSDDYEIEMRVRRKLSDDEVKELHNKYGRIYPYPYETQYVELEFDDVGVSDKVLCLGVELKDK
Ga0256630_10044	Ga0256630_1004438	F092227	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
Ga0256630_10271	Ga0256630_1027117	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLCAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL
Ga0256630_11345	Ga0256630_113458	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEILQQEGKRRGWWS
Ga0256630_14816	Ga0256630_148161	F068811	MDQDGSEHNICSNREGLCPGKKQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI
Ga0256630_15814	Ga0256630_158143	F032286	MVKWVYQIVTPIRHRALVFNTRLFAGTAADDALVTGSTLSFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIALSRISKRSENAL