Basic Information | |
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Taxon OID | 3300023235 Open in IMG/M |
Scaffold ID | Ga0222634_1001351 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #50 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8471 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002495 | Metagenome / Metatranscriptome | 554 | Y |
F028621 | Metagenome / Metatranscriptome | 191 | N |
F030149 | Metagenome / Metatranscriptome | 186 | N |
Protein ID | Family | RBS | Sequence |
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Ga0222634_10013511 | F030149 | AGGAG | MFVPVNDKLDKLVALTPDDQEKLSYYKSIVPLMISNCHKAHQTIPGYDKCKPEVEAFKWFDGINIPVHGYIDLKGDKVIIEDKCKMPRRGIVKKDGTRSWFPGKLPDRPSPYNLLQVDFYWSVFEVPVYLCYVNEKEFRVYHADNC |
Ga0222634_100135114 | F028621 | AGGA | MIKVKLEPFEVQLAFENSTKRYIENLKQGKGFSYGYTGGFEKQITDGVLGSLGEVAFAKGLNRYFNSSYSDSYARYTDSDMQDSIEIRSQKRKDNNFLLIRPNEKKAKYVLVIHNGDFEFSIMGWFPYKEDTEEMSKRLTDFGFSNRPAAYKVNINELNNMEDL |
Ga0222634_10013518 | F002495 | N/A | MSINNSNNGSGKQKDWVLFPFDATNERAIKLDFSGNVNLDNGNKGTILGVKGTSRDGNTKFVKIFAQVGVLFRGDDKFTGDMNYPEAGGAKGLIGWTNDEGNILSGYKNEPRPKQDAPTTTPSQPKAASKEIPF |
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