NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255842_1340472

Scaffold Ga0255842_1340472


Overview

Basic Information
Taxon OID3300023211 Open in IMG/M
Scaffold IDGa0255842_1340472 Open in IMG/M
Source Dataset NameActivated sludge enriched bacterial communities from WWTP in Fort Collins, Colorado, USA ? CA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterArgonne National Laboratory
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)1070
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Ppcp Degradation By Aerobic Enrichment Cultures (Carbon Source)

Source Dataset Sampling Location
Location NameFort Collins, Colorado, USA
CoordinatesLat. (o)40.585258Long. (o)-105.084419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077430Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0255842_13404722F077430AGGAGMYFIVEITPQGIETFLEGFEEVGEAWDVVSRLLCEARRRRRKVRYEVC

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