NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233412_10001931

Scaffold Ga0233412_10001931


Overview

Basic Information
Taxon OID3300023210 Open in IMG/M
Scaffold IDGa0233412_10001931 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)10357
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.6569Long. (o)-123.4875Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025412Metagenome202Y
F027524Metagenome194N
F076111Metagenome118N
F079336Metagenome116Y
F099320Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0233412_1000193110F025412N/AMDYRQLKWGALKSYGTKLGINTKGMTKQVLLEYLDAMPDVAHGIEEELKPFKGIKQNHPLFLELEPYLPYLKAYKKLKAVSRVPKVNEVIATLFVKYIEKQKNIRVNIGCNKCVNSYYERMIANYNKLVDEYGGGERI
Ga0233412_1000193112F027524N/ALNNFTIFVNVNEEFIKEKQQVIETACKNICKHSDIWKDLSQEVNIYFLTNELPNNLNKIDGFIFVVAYKMFHLSGSSFNRLHFDNILQDYTWIDYLKEMDIPCIDGNVYKEYIEQVEQLDEMERIWVEEIIKRNFSIKLFSEHTGIHRASATERMNSIYEKLRKHNK
Ga0233412_1000193117F076111N/AMTLEQLTTKLELNILIEKVLAKSGAYKSPGSKEEALQGIALSQSTKDTLHTLKSALEWLNLSEDLVNDYRKEIQNKDAQIYKLSVENSKLRTRANLADQRTNNISEYIELHKNKTNEST
Ga0233412_1000193124F079336N/AMETILRTELKTADKRIIVLESTIETYKRIIAALDERIELMERNHKFELENFYTKNSEL
Ga0233412_100019319F099320N/AMEEENVYNYYLEVQEDGNLYMVTEYMNGYITQWTANATIEVNDEVYFINLYED
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Institute for Fundamental Biomedical Research
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