NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10057147

Scaffold Ga0214919_10057147


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10057147 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3654
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F048123Metagenome / Metatranscriptome148Y
F104482Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100571472F030670N/AMKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWMENDSKRIN
Ga0214919_100571474F034827N/AMKYTITSQDKEALTEFDKIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSNKKRNTLNDPDEQQGNAVYKLNAKINIVIL
Ga0214919_100571475F048123GGAMKPRYDFNKAKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYKFSLTNSSNISKMAERMYNFRPF
Ga0214919_100571476F104482N/AMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFKFRLFPKFFYMNGKYFTECGFHWLGWIFEFQWNR
Ga0214919_100571478F032536N/AMSERKTFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYIGKEDDFVFNTTLGCHIDKITGLEISLDQKEYEYVLDEIIFALQMIVNEEDSKVGLEELYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLILLGLYFRDLWD
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