NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10046755

Scaffold Ga0214919_10046755


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10046755 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4198
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001840Metagenome / Metatranscriptome627Y
F023346Metagenome / Metatranscriptome210Y
F045085Metagenome / Metatranscriptome153Y
F091907Metagenome / Metatranscriptome107Y
F103125Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1004675510F045085N/AMNKIINLILGLIFGTIFAVGLLLVLAIFFAVLIPFIFYFTVKEVLRALIKN
Ga0214919_1004675513F001840N/AMKDPDSIFLICDCYEHGLLVEKFKDENEVSLSLFERGLKGRTLCWSERLRWCWQILRYGKPWSDFVILNEENQKQLNEFLSK
Ga0214919_1004675514F103125N/AIEKLPTRKEIKVWWQQIFPITNTIRLYAYDSDTNDKYDYWIEYDVTFVDGKVTGAKVIEFTATDNSERKEQHRKDVEYWKNRRAFEKTLFYKLFGKCYNRSISFVCRRIHTIATWVTYKIWKVEKFLKI
Ga0214919_100467554F091907N/AMNKNKTGRKATAVNEITDRNFTIVDLININANVKAPTIRMHVKRNVTAGRYKISGSQKTGKRGKPSIVYTYDATPAVVATTATAESSQTSAN
Ga0214919_100467559F023346N/AMNNTISKNIILTYAKALRTIQKEQIDPYINLIEKELIKLYPELEDREDNALNWAYDILNAESNTEVVETLTRLNEIISNERKEKWTCSYCGKNTYNDDVEYLFGTNHIGCVLEEDIKNREHSDPDYILDARLQKISDIERKLDIYESELNKLHAELVHLRSDYHHEPTN
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