Scaffold Ga0214919_10028530

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10028530
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5905
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009268	Metagenome / Metatranscriptome	320	Y
F027512	Metagenome	194	Y
F055668	Metagenome / Metatranscriptome	138	Y
F078217	Metagenome	116	N
F079959	Metagenome	115	N
F098655	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002853010	F079959	GGA	MSGQYKEKICPKCGVKHRKRGLHCSASCAATGRPVSEETRELHRQNTREYLQTPEGIANSRKTGDGTQIAADEFAVDIPDIMDLRDYDSLDGYDRAENW
Ga0214919_1002853012	F027512	AGGA	VTVEEQIEEFLKMYGDRLPNPEHCPKEFEYFVKLYKYCKSLL
Ga0214919_1002853014	F009268	N/A	MKQWQEKEFSQWVYYDDEDGKIIGAVYKVGNSVGIWGAKVYAEVEGILGQYIDSTYAKRAVEYYWEVQSRTLLENK
Ga0214919_1002853015	F078217	AGGAG	MQNNKNFWGEPDDIEPLPEWMDPRTYQNNNQFKRKTKSLNEAINDALKKPAVPIILQEPK
Ga0214919_100285303	F098655	AGGA	MMNSVYIVRSGLYDGNIGLTKWMNVRVFTSYAVAEAWVESEKLRDKSFNENFDSYEIEEMTVYE
Ga0214919_100285309	F055668	AGAAGG	MTTPTLEEINDLCRAIAEETLDADIEELEQLELQKQYEFMQYADDAADLDAEYYGVA