NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214919_10026633

Scaffold Ga0214919_10026633


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10026633 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6189
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032536Metagenome / Metatranscriptome179Y
F034827Metagenome / Metatranscriptome173Y
F062447Metagenome / Metatranscriptome130N
F078229Metagenome / Metatranscriptome116Y
F104482Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002663310F062447AGGAGMKHKIFWENNSRIKGIVPAEQIIKKTQTHNFPCEAVTIRMHDLNSKNPIAVAYFHGKESQHIGWGGQNHSFAETKLIVSFNKEKEEYGFNGAINSFSLQDLKEVLDSVREVLNKV
Ga0214919_1002663311F032536AGAAGMNQKQTFEELMRSFRFHKNPILNWFLGELSYYSHTYLNVKWGLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0214919_1002663313F104482N/AMTSEEFEKVMKAQGRLISKVYYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR
Ga0214919_1002663315F034827N/AMKYNITSQDKEALTEFDQLKEGEVFSFFTPESTDRGNHAIYMKIRVPNTTSVNIVDLGDGKAYDFSAKKRNSINDPDEKQGNRVYKLNAKVNIVVL
Ga0214919_1002663316F078229N/AMSNTKYSYYVEQDKDKDGNYIQSFSVYKTPVVKTIKLKTFKKLKDANDFLDKYESN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.