NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10020003

Scaffold Ga0214919_10020003


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10020003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7531
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058136Metagenome135Y
F061842Metagenome131N
F063684Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002000313F063684GGAGGMQIETVTISTRELQQALRDYCATNGGGIPTTVIIQSYAKQIVVSLEAGGSIAADEFHHAATGT
Ga0214919_100200037F058136GGAGMIQTNDEKVAAAIAYLRSRGKYLLDGCKWVPTNSGNTNVAATMAAYREEMK
Ga0214919_100200038F061842AGGAGMEKMTLTEFRVVLEKFMLARARYLDTRTARASKAWKAADLELANAYNKYMETRK

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