Metagenome Family F061842

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F061842
Family Type	Metagenome
Number of Sequences	131
Average Sequence Length	51 residues
Representative Sequence	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKAWKAADLELALAYNKYMETRK
Number of Associated Samples	57
Number of Associated Scaffolds	130

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	80.16 %
% of genes near scaffold ends (potentially truncated)	19.85 %
% of genes from short scaffolds (< 2000 bps)	56.49 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Duplodnaviria (45.802 % of family members)
NCBI Taxonomy ID	2731341
Taxonomy	All Organisms → Viruses → Duplodnaviria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (46.565 % of family members)
Environment Ontology (ENVO)	Unclassified (79.389 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (87.023 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0049085_102525632 2Ga0049082_100081346 3Ga0049082_102888103 4Ga0049084_102536492 5Ga0070744_101151022 6Ga0075464_100626071 7Ga0075464_104625555 8Ga0075464_105837622 9Ga0104986_182946 10Ga0114973_1000548910 11Ga0114973_100594556 12Ga0114973_104120821 13Ga0114973_105999682 14Ga0114962_1000119211 15Ga0114962_1000421316 16Ga0114962_1001784412 17Ga0114962_100206011 18Ga0114962_100607231 19Ga0114962_101305792 20Ga0114968_100022675 21Ga0114968_100042275 22Ga0114968_1004073510 23Ga0114968_101066601 24Ga0114968_101765233 25Ga0114968_107643751 26Ga0114978_101105237 27Ga0114981_105055964 28Ga0114970_103193172 29Ga0114970_104830043 30Ga0114975_103775774 31Ga0114975_105432762 32Ga0114979_103618583 33Ga0114969_1000566914 34Ga0114969_100338392 35Ga0114969_1004867110 36Ga0114969_100759904 37Ga0114969_100824614 38Ga0114969_101926242 39Ga0114969_102595471 40Ga0114969_102858893 41Ga0114964_102511462 42Ga0114960_100084063 43Ga0114960_101952832 44Ga0114967_100528421 45Ga0114967_101555911 46Ga0114967_102861952 47Ga0133913_1048208310 48Ga0133913_113597472 49Ga0133913_115814421 50Ga0133913_121266532 51Ga0133913_131686701 52Ga0151515_1000839 53Ga0151515_1000890 54Ga0151515_1026310 55Ga0151514_1024619 56Ga0151514_1058418 57Ga0153698_117238 58Ga0153698_126020 59Ga0153699_120638 60Ga0119955_100732515 61Ga0119955_10117919 62Ga0119955_11584173 63Ga0181338_100027116 64Ga0181338_10346953 65Ga0181362_10750993 66Ga0181365_10664661 67Ga0181365_10836761 68Ga0181365_11227182 69Ga0181365_11303161 70Ga0181356_10057842 71Ga0181356_10233751 72Ga0181358_10062493 73Ga0181358_11124735 74Ga0181357_10705011 75Ga0181357_10870714 76Ga0181357_11943421 77Ga0181357_12404293 78Ga0181349_11696211 79Ga0181349_12469801 80Ga0181346_10763144 81Ga0181355_13764583 82Ga0181359_10490401 83Ga0181359_10830114 84Ga0181359_10915074 85Ga0181359_11376061 86Ga0181359_11604963 87Ga0181359_12025671 88Ga0181359_12216693 89Ga0211726_107167133 90Ga0211729_108315113 91Ga0194048_100120953 92Ga0194060_101244603 93Ga0181354_100012610 94Ga0181354_11024271 95Ga0181351_11815342 96Ga0214919_1000170615 97Ga0214919_100200038 98Ga0214919_101586994 99Ga0208916_102188771 100Ga0208916_105180491 101Ga0209188_11790534 102Ga0209188_12276332 103Ga0209190_100032337 104Ga0209084_11765024 105Ga0209596_100054810 106Ga0209596_10028045 107Ga0209596_10163676 108Ga0209596_10180562 109Ga0209596_10270292 110Ga0209596_10277098 111Ga0209596_10283639 112Ga0209596_104596510 113Ga0209596_10693028 114Ga0209596_12035742 115Ga0209596_12111393 116Ga0209088_1000028018 117Ga0209088_102066243 118Ga0209086_103031812 119Ga0209354_100058858 120Ga0209668_108931623 121Ga0209400_10205171 122Ga0315293_106861612 123Ga0315293_109733302 124Ga0315285_109107171 125Ga0315294_106355785 126Ga0315274_102306893 127Ga0315274_107343882 128Ga0315274_114946171 129Ga0315284_102394014 130Ga0315284_121820052 131Ga0315273_116083205
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0049085_102525632 2Ga0114973_100594556 3Ga0114962_1000119211 4Ga0114962_100607231 5Ga0114981_105055964 6Ga0114969_102858893 7Ga0114967_100528421 8Ga0181362_10750993 9Ga0181359_10490401 10Ga0211729_108315113 11Ga0209596_10283639
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0049085_102525632 2Ga0114973_100594556 3Ga0114962_1000119211 4Ga0114962_100607231 5Ga0114981_105055964 6Ga0114969_102858893 7Ga0114967_100528421 8Ga0181362_10750993 9Ga0181359_10490401 10Ga0211729_108315113 11Ga0209596_10283639
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 78.43% β-sheet: 0.00% Coil/Unstructured: 21.57%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 130 Family Scaffolds
PF14354	Lar_restr_allev	19.23
PF04545	Sigma70_r4	8.46
PF00271	Helicase_C	6.15
PF08291	Peptidase_M15_3	4.62
PF11351	GTA_holin_3TM	3.85
PF09374	PG_binding_3	3.08
PF09588	YqaJ	3.08
PF10765	Phage_P22_NinX	2.31
PF11753	DUF3310	2.31
PF00176	SNF2-rel_dom	2.31

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COG ID	Name	Functional Category	% Frequency in 130 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	1.54
COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	Transcription [K]	0.77
COG0720	6-pyruvoyl-tetrahydropterin synthase	Coenzyme transport and metabolism [H]	0.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.83 %
Unclassified	root	N/A	38.17 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	3.82 %
Unclassified	root	N/A	38.17 %
Viruses	superkingdom	All Organisms → Viruses	58.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.82 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	45.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Unclassified	root	N/A	38.17 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	0.76 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	45.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Unclassified	root	N/A	38.17 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	0.76 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Unclassified	root	N/A	38.17 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	0.76 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	45.80 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	45.80 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Unclassified	root	N/A	38.17 %

Name	Rank	Taxonomy	Distribution
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.76 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	45.04 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Unclassified	root	N/A	38.17 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Siphoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae	0.76 %
Unclassified	root	N/A	38.17 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	45.04 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Unclassified	root	N/A	38.17 %
unclassified Siphoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae	0.76 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	45.04 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	11.45 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	0.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.53 %
Salicola phage CGphi29	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Salicola phage CGphi29	0.76 %
Unclassified	root	N/A	38.17 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	45.04 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005583\|Ga0049085_10252563	Not Available	578	Open in IMG/M
3300005584\|Ga0049082_10008134	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3518	Open in IMG/M
3300005584\|Ga0049082_10288810	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	549	Open in IMG/M
3300005585\|Ga0049084_10253649	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	591	Open in IMG/M
3300006484\|Ga0070744_10115102	Not Available	776	Open in IMG/M
3300006805\|Ga0075464_10062607	All Organisms → cellular organisms → Bacteria	2081	Open in IMG/M
3300006805\|Ga0075464_10462555	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	774	Open in IMG/M
3300006805\|Ga0075464_10583762	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	687	Open in IMG/M
3300007734\|Ga0104986_1829	Not Available	35117	Open in IMG/M
3300009068\|Ga0114973_10005489	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8617	Open in IMG/M

Showing 1 to 10 of 126 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	95.42%
Marine	Environmental → Aquatic → Marine	4.58%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	3.82%
Lake	Environmental → Aquatic → Freshwater → Lake	66.41%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.72%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.29%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	7.63%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.76%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	58.78%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	25.95%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.82%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.29%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.76%

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	1.53%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	3.82%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.76%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	8.40%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.29%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.29%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	46.56%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	22.90%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.76%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	3.05%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	7.63%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental	Open in IMG/M
3300005584	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF	Environmental	Open in IMG/M
3300005585	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF	Environmental	Open in IMG/M
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental	Open in IMG/M
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental	Open in IMG/M
3300007734	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009151	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M

Showing 1 to 10 of 57 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0049085_102525632	3300005583	Freshwater Lentic	METMTLTQFKVVLEKFMLARGRYMNSPTSATTKAWKAADLELALAYNKYMETRK*
Ga0049082_100081346	3300005584	Freshwater Lentic	MTLTQFKVVLEKFMLARGRYMNSPTSATSKAWKSADLELALAYNKYMETRK*
Ga0049082_102888103	3300005584	Freshwater Lentic	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMET
Ga0049084_102536492	3300005585	Freshwater Lentic	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMETRK*
Ga0070744_101151022	3300006484	Estuarine	MTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRK*
Ga0075464_100626071	3300006805	Aqueous	MEKMTLTQFKVVLEKFMLARSRYMNSPTSTTAKKWKEADLELANAYAKYMETRK*
Ga0075464_104625555	3300006805	Aqueous	MTLTQFKIVLEKFMLARGRYMNSPTSTTTKAWKAADLELALAYAKYMETRK*
Ga0075464_105837622	3300006805	Aqueous	MTLTQFKVILEKFMLARGRYMNSPTSTTSKAWKAADLELANAYNKYMETRK*
Ga0104986_182946	3300007734	Freshwater	MEKMTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKEADLELANAYAKYMETRK*
Ga0114973_1000548910	3300009068	Freshwater Lake	MTLTQFKIVLEKFMLARGRYMNSPTSTTAKKWKDADLELANAYAKYMETRK*
Ga0114973_100594556	3300009068	Freshwater Lake	MTLTQFKVVLEKFMLARARYLDTRTARASKAWKEADLELALAYNKYTGARK*
Ga0114973_104120821	3300009068	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSATAKKWKDADLELALAYNKYMETRK*
Ga0114973_105999682	3300009068	Freshwater Lake	MTLTQFKVVLEKFMLARGRYVNSPTSTTAKKWKDADLELANAYAKYMETRK*
Ga0114962_1000119211	3300009151	Freshwater Lake	MTQAEFRVVLEKFMTARKRYFDTRTAVASKAWKAADLELALAYNAYMKGKK*
Ga0114962_1000421316	3300009151	Freshwater Lake	MTQAEFRVVLAKFMTARKRYFDTRTATASKAWKAADLELALAYNAYMKGKK*
Ga0114962_1001784412	3300009151	Freshwater Lake	MTLTQFKTVLEKFMLARGRYMISPTSTTTKAWKAADLELANAYNKYMETRK*
Ga0114962_100206011	3300009151	Freshwater Lake	MVQMTQAEFRVVLAKFMTARKRYFDTRTATASKAWKAADLELALAYNAYMK
Ga0114962_100607231	3300009151	Freshwater Lake	RNHDKKRNAQMTQAEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMEGRT*
Ga0114962_101305792	3300009151	Freshwater Lake	MTQAEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMENRT*
Ga0114968_100022675	3300009155	Freshwater Lake	MEKMTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELANAYNKYMETRK*
Ga0114968_100042275	3300009155	Freshwater Lake	MEKITLTEFRVVLEKFMLARARYLDTRTARASKAWKEADLELALAYNKYTGARK*
Ga0114968_1004073510	3300009155	Freshwater Lake	QKMTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMETRK*
Ga0114968_101066601	3300009155	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMDSPTSTTTKAWKAADLELANAYNKYMETRK*
Ga0114968_101765233	3300009155	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKAWKAADLELALAYNKYMETRS*
Ga0114968_107643751	3300009155	Freshwater Lake	MEQGTIMTQKEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMENRT*
Ga0114978_101105237	3300009159	Freshwater Lake	MTLTQFKVVLEKFMLARSRYMNSPTSATTKAWKAADLELALAYA
Ga0114981_105055964	3300009160	Freshwater Lake	MEKMTLTKFKVVLEKFMLARARYLDKHTSLSATEWK
Ga0114970_103193172	3300009163	Freshwater Lake	MTQAEFRVVLAKFMAARLHYFDTRTATASKAWKAADLELALAYNAYMKGKK*
Ga0114970_104830043	3300009163	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELANAYAKYMETRK*
Ga0114975_103775774	3300009164	Freshwater Lake	MTLTQFKVVLEKFMLARSRYMNSPTSATTKAWKAADLELANAYNKYMETRK*
Ga0114975_105432762	3300009164	Freshwater Lake	MEKMTLTQFKIVLEKFMLARGRYMNSPTSTTSKAWKAADLELANAYNKYMETRK*
Ga0114979_103618583	3300009180	Freshwater Lake	MTLTQFKVVLEKFMLARSRYMNSPTSATTKAWKAADLELALAYAKYMETRK*
Ga0114969_1000566914	3300009181	Freshwater Lake	MTQAEFRVVLEKFMTARKRYFDTRTAVASKAWKAADLELALAYNEYVKGKK*
Ga0114969_100338392	3300009181	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYMETRK*
Ga0114969_1004867110	3300009181	Freshwater Lake	MTQAQFRVILAKFMTARKRYFDTRTAVASKAWKAADLELALAYNAYMKGKK*
Ga0114969_100759904	3300009181	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSTTAKKWKDADLELANAYAKYMETRK*
Ga0114969_100824614	3300009181	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSTTSKAWKAADLELAIAYNKYMETRK*
Ga0114969_101926242	3300009181	Freshwater Lake	MTLTQFKIVLEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRK*
Ga0114969_102595471	3300009181	Freshwater Lake	MTQAEFRVVLAKFMTARKRYFDTRTATASKAWKAADLELALAYNKYM
Ga0114969_102858893	3300009181	Freshwater Lake	MEKMTLTKFKVVLEKFMLARSRYLDKHTSLSATEWKAADLELALAYNRYMLEGRK*
Ga0114964_102511462	3300010157	Freshwater Lake	MTQAEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMEGRT*
Ga0114960_100084063	3300010158	Freshwater Lake	MTQAEFRVVLEKFMTARKRYFDTRTAVASKAWKAADLELALAYNAYMRAKK*
Ga0114960_101952832	3300010158	Freshwater Lake	MVQMTQTEFRVVLAKFMTARKRYFDTRTATASKAWKAADLELALAYNAYMKGKK*
Ga0114967_100528421	3300010160	Freshwater Lake	MTLTQFKIVLEKFMLARGRYMNSPNSTTTKAWKAADLE
Ga0114967_101555911	3300010160	Freshwater Lake	MTQAEFRVVLEKFMTARKRYFDTRTAVASKAWQAADLKLALAYNAYMKGKK
Ga0114967_102861952	3300010160	Freshwater Lake	MEKMTLTKFKVVLEKFMLARSRYMDKHTSLSATEWKAADLELALAYNRYMAEGRK*
Ga0133913_1048208310	3300010885	Freshwater Lake	KMEPQKMTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMETRK*
Ga0133913_113597472	3300010885	Freshwater Lake	MTQAEFRVVLEKFMTARKRYFDTRTAVASKAWQAADLKLALAYNAYMKGKK*
Ga0133913_115814421	3300010885	Freshwater Lake	QFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYMETRK*
Ga0133913_121266532	3300010885	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKAWKAADLELALAYNKYMETRK*
Ga0133913_131686701	3300010885	Freshwater Lake	MTQAEFRVVFAKFMTARKRYFDTRTATASKAWKAADLELALAYNAYMK
Ga0151515_1000839	3300011114	Freshwater	MTLTQFKVVLEKFMLARSRYMNSPTSTTTKAWKAADLELANAYAKYMETRK*
Ga0151515_1000890	3300011114	Freshwater	MTLTQFKVVLEKFMLARGRYMNSPTSVTTKAWKAADLELALAYNKYMETRK*
Ga0151515_1026310	3300011114	Freshwater	MTLTQFKVVLEKFMLARGRYMSSPTSATAKKWKAADLELALAYNKYMETRK*
Ga0151514_1024619	3300011115	Freshwater	MTLTQFKVVLEKFMLARSRYMNSPTSATAKKWKAADLELALAYNKYMETRK*
Ga0151514_1058418	3300011115	Freshwater	MTQAEFRVVLEKFMLARGRYMNSPTSATAKAWKAADLELALAYNKYMENRT*
Ga0153698_117238	3300011335	Freshwater	MTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELALAYVKYMETRSK*
Ga0153698_126020	3300011335	Freshwater	MTLTQFKVVLEKFMLARGRYVNSPTSTTAKKWKEADLELALAYAKYMETRK*
Ga0153699_120638	3300011338	Freshwater	MTLTQFKVILEKFMLARGRYMNSPTSTTAKKWKEADLELALAYAKYMETRK*
Ga0119955_100732515	3300012006	Freshwater	MTQAEFRVVLEKFMTARKRYLDTRTATASKAWKAADLELALAYNKYMEGKK*
Ga0119955_10117919	3300012006	Freshwater	MTLTQFKVVLEKFMLARGRYMNSPTSATAKKWKDADLELALAYSKYMETRK*
Ga0119955_11584173	3300012006	Freshwater	MTLTQFKVVLEKFMLARSRYMNSPTSTTTKAWKAADLELALAYNKYMETRK*
Ga0181338_100027116	3300015050	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYNKYMETRK*
Ga0181338_10346953	3300015050	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRSK*
Ga0181362_10750993	3300017723	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSK
Ga0181365_10664661	3300017736	Freshwater Lake	TGNRKMESQKMTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYMETRSK
Ga0181365_10836761	3300017736	Freshwater Lake	MEKMTLTQFKVVLEKFMLARSRYMNSPTSTTSKAWKAADLELAIAYNKYM
Ga0181365_11227182	3300017736	Freshwater Lake	MTLTQFKVILEKFMLARGRYINSPTSTTAKKWKEADLELANAYAKYMETRK
Ga0181365_11303161	3300017736	Freshwater Lake	KMEPEEIMTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMETRK
Ga0181356_10057842	3300017761	Freshwater Lake	MTLTQFKIVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYNKYMETRK
Ga0181356_10233751	3300017761	Freshwater Lake	MEKMTLTQFKVVLEKFMLARGRYVNSPTSTTAKKWKDADLELALAYSKYMETRK
Ga0181358_10062493	3300017774	Freshwater Lake	MEKMTLTQFKVVLEKFMLARNRYVNSPTSTTAKKWKDADLELALAYNKYMETRK
Ga0181358_11124735	3300017774	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYNKYMETRK
Ga0181357_10705011	3300017777	Freshwater Lake	TQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELANAYNKYMETRK
Ga0181357_10870714	3300017777	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSATSKAWKAADLELALAYAKYMETRK
Ga0181357_11943421	3300017777	Freshwater Lake	IMTLTQFKVILEKFMLARGRYMNSPTSTTAKKWKDADLELALAYNKYMETRK
Ga0181357_12404293	3300017777	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYME
Ga0181349_11696211	3300017778	Freshwater Lake	TVEPQKMTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRSK
Ga0181349_12469801	3300017778	Freshwater Lake	TVEPQKMTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYMETRSK
Ga0181346_10763144	3300017780	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKSADLELALAYSKYMETRK
Ga0181355_13764583	3300017785	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELA
Ga0181359_10490401	3300019784	Freshwater Lake	FKVVLEKFMLARNRYVNSPTSTTAKKWKDADLELALAYNKYMETRK
Ga0181359_10830114	3300019784	Freshwater Lake	MTLTQFKIVLEKFMLARGRYMNSPTSTTAKKWKDADLELANAYAKYMETRK
Ga0181359_10915074	3300019784	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMETRK
Ga0181359_11376061	3300019784	Freshwater Lake	MEKMTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELAIAYNKYMETRK
Ga0181359_11604963	3300019784	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRK
Ga0181359_12025671	3300019784	Freshwater Lake	MEKMTLTKFKVVLEKFMLARSRYLDKHTSLSATEWKAADLELALAYNRYTKE
Ga0181359_12216693	3300019784	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRSK
Ga0211726_107167133	3300020161	Freshwater	MSEKMTLTKFKIVLEKFMFARARYLDKHTSISAKEWKNADLELALAYNRYMLDGRK
Ga0211729_108315113	3300020172	Freshwater	MSEKMTLTKFKIVLEKFMFARARYLDKHTSISAKEWKNADLELALAYN
Ga0194048_100120953	3300021519	Anoxic Zone Freshwater	MTQAEFRVVLAKFMTARKRYFDTRTAVASKAWKAADLELALAYNAYMKGKK
Ga0194060_101244603	3300021602	Anoxic Zone Freshwater	MTQAQFRVVLAKFMAARKRYFDTRTATASKAWKAADLELALAYNAYMKVKK
Ga0181354_100012610	3300022190	Freshwater Lake	MTLTQFKVVLEKFMLARNRYVNSPTSTTAKKWKDADLELALAYNKYMETRK
Ga0181354_11024271	3300022190	Freshwater Lake	VLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYMETRSK
Ga0181351_11815342	3300022407	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELANAYNKYMETRK
Ga0214919_1000170615	3300023184	Freshwater	MTLTQFKVVLEKFMLARSRYMNSPTSTTTKAWKAADLELALAYNKYMETRK
Ga0214919_100200038	3300023184	Freshwater	MEKMTLTEFRVVLEKFMLARARYLDTRTARASKAWKAADLELANAYNKYMETRK
Ga0214919_101586994	3300023184	Freshwater	MEKMTLTQFKIVLEKFMLARGRYMNSPTSTTSKAWKAADLELALAYNRYMETRSK
Ga0208916_102188771	3300025896	Aqueous	MEKMTLTQFKVVLEKFMLARSRYMNSPTSTTAKKWKEADL
Ga0208916_105180491	3300025896	Aqueous	MTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLEL
Ga0209188_11790534	3300027708	Freshwater Lake	MTQAEFRVVLEKFMTARKRYFDTRTAVASKAWKAADLELALAYNAYMKGKK
Ga0209188_12276332	3300027708	Freshwater Lake	MTQAEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMENRT
Ga0209190_100032337	3300027736	Freshwater Lake	MTLTQFKVVLEKFMLARARYLDTRTARASKAWKEADLELALAYNKYTGARK
Ga0209084_11765024	3300027749	Freshwater Lake	MTQAEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMEGRT
Ga0209596_100054810	3300027754	Freshwater Lake	MEKITLTEFRVVLEKFMLARARYLDTRTARASKAWKEADLELALAYNKYTGARK
Ga0209596_10028045	3300027754	Freshwater Lake	MTLTQFKVVLEKFMLARGRYVNSPTSTTAKKWKDADLELANAYAKYMETRK
Ga0209596_10163676	3300027754	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSTTAKKWKDADLELANAYAKYMETRK
Ga0209596_10180562	3300027754	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYMETRK
Ga0209596_10270292	3300027754	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSATAKKWKDADLELALAYNKYMETRK
Ga0209596_10277098	3300027754	Freshwater Lake	MEKMTLTQFKVVLEKFMLARGRYMNSPTSTTSKAWKAADLELANAYNKYMETRK
Ga0209596_10283639	3300027754	Freshwater Lake	MSSNVSKMTLTQFKVVLGKFMLARQKYLSTRTVVAAKEWKAADLELANAYAKYIETRERR
Ga0209596_104596510	3300027754	Freshwater Lake	MTQAQFRVILAKFMTARKRYFDTRTAVASKAWKAADLELALAYNAYMKGKK
Ga0209596_10693028	3300027754	Freshwater Lake	MTQAEFRVVLAKFMAARLHYFDTRTATASKAWKAADLELALAYNAYMKGKK
Ga0209596_12035742	3300027754	Freshwater Lake	MEKMTLTKFKVVLEKFMLARSRYLDKHTSLSATEWKAADLELALAYNRYMAEGRK
Ga0209596_12111393	3300027754	Freshwater Lake	MTLTQFKIVLEKFMLARGRYMNSPTSTTTKAWKAADLELALAYNKYMETRK
Ga0209088_1000028018	3300027763	Freshwater Lake	MEKMTLTKFKVVLEKFMLARARYLDKHTSLSATEWKAADLELALAYNRYMAEGRK
Ga0209088_102066243	3300027763	Freshwater Lake	MEKMTLTQFKIVLEKFMLARGRYMNSPTSTTSKAWKAADLELANAYNKYMETRK
Ga0209086_103031812	3300027770	Freshwater Lake	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKAWKAADLELALAYNKYMETRS
Ga0209354_100058858	3300027808	Freshwater Lake	MTLTQFKVILEKFMLARGRYMNSPTSATAKKWKEADLELALAYNKYMETRK
Ga0209668_108931623	3300027899	Freshwater Lake Sediment	MTQKEFRVVLVKFMNARARYLDTRTGAAAKAWKAADLELALAYNKYMENRT
Ga0209400_10205171	3300027963	Freshwater Lake	RKVEPQKMTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKDADLELALAYSKYMETRK
Ga0315293_106861612	3300031746	Sediment	MTLTQFKVVLEKFMLARGRYMNSPTSTTTKAWKAADLELALAY
Ga0315293_109733302	3300031746	Sediment	MTLTQFKVVLEKFMLARGRYMNSPTSATTKAWKAADLELALAYAKYMETRK
Ga0315285_109107171	3300031885	Sediment	MTLTQFKVVLEKFMLARGRYMNSPTSATTKAWKTADLELALAYAKYMET
Ga0315294_106355785	3300031952	Sediment	MTLTQFKIVLEKFMLARGRYMNSPTSTTTKAWKAADLELANAYNKYIETRK
Ga0315274_102306893	3300031999	Sediment	MTLTQFKVVLEKFMLARGRYMNSPTSATSKAWKAADLELAIAYNKYMETRK
Ga0315274_107343882	3300031999	Sediment	MTLTQFKVVLEKFMLARGRYMNSPTSATTKAWKTADLELALAYAKYMETRK
Ga0315274_114946171	3300031999	Sediment	MTLTQFKVVLENFMLARGRYMNSPTSTTAKKWKEADLELALAYSKYMETRK
Ga0315284_102394014	3300032053	Sediment	MTLTQFKVVLEKFMLARGRYMNSPTSTTAKKWKEADLELALAYSKYMETRK
Ga0315284_121820052	3300032053	Sediment	MTLTQFKVVLEKFMLARGRYINSPTSATTKAWKTADLELALAYAKYMETRK
Ga0315273_116083205	3300032516	Sediment	MTLTQFKVVLEKFMLARGRYINSPTSATTKAWKAADLELALAYAKYMETRK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F061842

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences