Scaffold Ga0214919_10017330

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10017330
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8327
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030759	Metagenome / Metatranscriptome	184	Y
F073553	Metagenome / Metatranscriptome	120	Y
F078728	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001733015	F078728	GGAG	MAKSTRSPLQHFFAKSLKMARSRDKMNNRTSDDNVTIDYLCGLYYGQEGKCFHTGEIMTVERGLIEGAVIFTLCTMDRIDNAQGYNVGNIILACDGINRMRSDMPLLQFRALCARIGMNG
Ga0214919_100173303	F073553	AGG	MTEHEFYAQIQEDYYTEFAGAELSEIFVDTNTHPEFFEFDDIPF
Ga0214919_100173305	F030759	N/A	MINKISWIGTLSSIIGAFIVASKLFFLGYCFFIIGSLSWLLVGYYRKDKSLIVLNGTFFLANILGLFNSF