Scaffold Ga0214919_10006795

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10006795
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15606
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (47.06%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024040	Metagenome / Metatranscriptome	207	Y
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F039497	Metagenome / Metatranscriptome	163	N
F048101	Metagenome / Metatranscriptome	148	N
F062446	Metagenome / Metatranscriptome	130	Y
F066486	Metagenome / Metatranscriptome	126	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000679511	F048101	AGGAG	MKKKMKMKKFKNIKEFLETCSEDEKEYIYDLYNNASVADLIDLLFEHLPADDTIQEIQEYREEMEWDNNEAKKSNKPKRKCDCDFVGCQGC
Ga0214919_1000679514	F062446	N/A	MSFKPIKVIAFVLIVLAWILMTFFFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQINIFGATY
Ga0214919_1000679536	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPSVDLIDAKLLKTFPSPYHARNWMENDGKNN
Ga0214919_1000679539	F104482	N/A	MKKKKKRMTSEEFEKAMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214919_1000679541	F032536	GGA	MSKKETFEELMRSFRFHKNPILNWAFAESNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRKNYHSLANRHHLIIDDKIVPYVGKESDFDFNEKLGCYTDKTTGLGISLDQKEYEYVLDEIIFALQTILDEDDINVRLEEVYEVYPQGFDPIKDRQMFLTKESDGNYLVEFETKDNIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0214919_1000679543	F024040	GAGG	MNVYVSGHNWLAKVDLEDSIRKNDRYAEATTRAIESVLDDEEKQGVELKIMDYNDYGLGIITLTYDEKDIKNEGEHRVMLTSNILANAGRWEQYKFLKDYEEKCKEQGL
Ga0214919_1000679549	F039497	N/A	MSEEDNFNCKAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNAHIEEGDEDEI
Ga0214919_100067959	F066486	N/A	MKNKTLSKNDPYYLKVGKFKKKNVFDTQVDMGDRMKDFFLGLGRRVITEDEFINIGFNYALIKGLGEAEKVKSKKK