Scaffold Ga0214919_10005984

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10005984
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16919
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (62.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008814	Metagenome / Metatranscriptome	327	Y
F011394	Metagenome / Metatranscriptome	291	Y
F040629	Metagenome / Metatranscriptome	161	Y
F060917	Metagenome / Metatranscriptome	132	Y
F072349	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000598427	F008814	GAG	MDNKLTVLEEIIKEIGEELYQKWYNALALEDRTEEASQAMSSNAGQTTIWVIQKFMNKFNNAAEELKGNK
Ga0214919_1000598433	F072349	AGGA	MEEIVLCYSCNKPKNKVSVKKSTILAINLLLCSTCNENKIEPRWAVILAGRQYGAEHVKDFIAKKRYNGDEITASELLI
Ga0214919_1000598435	F011394	GGAG	MIYLGKDKDHFKYGVNEWTGEPNKPTFYNIEMAKKIRELKKPANDLKMDIVKYPDFLAIRLYEDNFARYDGTLKARVIEYVEMVKNILESYGVRVELEGKPGGG
Ga0214919_1000598440	F040629	N/A	MNKYSINLEIKVEVEAFNLEDAKEYINDIFNIDDEIKSVSILKIKDISK
Ga0214919_100059847	F060917	AGGTGG	MIDWLVNKIFGWDTLKNAVFDEVHMYNHLDSIMKDPDGMETASLSWMEGEIWYGWTYNKNKARYYFDDIGNKSLIGLWEDQWLKEADEDE