Scaffold Ga0214919_10005479

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10005479
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18001
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033427	Metagenome	177	Y
F068569	Metagenome / Metatranscriptome	124	N
F092039	Metagenome	107	N
F093763	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000547916	F092039	AGGAG	MNPQTTEYDPPAYPMALVYWADACGGDAGWLTLEDVEDDGEVLVQSIGFLIPVEDPGAKQNHVTLLQSFHDGEGINLFYIPVAMIRKIILLSA
Ga0214919_1000547923	F068569	AGG	MIKVQTLILRIFGVFGSSALAAVAGGAIFGVELWKSAAIAGVVAAGKVTESLLRSWSEDGTLTKEEVAAAFGKKG
Ga0214919_1000547930	F033427	AGG	MSNEQEPILGTFHDALTGETITRELTPEEIAALPEPAPPLGE
Ga0214919_100054795	F093763	GGTGG	MTGGMEITGYNPKFDFKTDLAYGHEGEQNLIDFFHALNAGTVEVKADRYRNGRMAVETQQKPAQGEWKDSGINVTTAQWWAYRFAPDSYVLVSVQRLKNYLRYNYDRLEKRDFAPQSDNPARGFLLFPHHVQDLQTSELYD